Gene Details:

  • Gene ID: KN541602.1_FGP002
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Oryza longistaminata
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015623252.1  — bZIP transcription factor RISBZ4-like isoform X1
  • Swissprot:  Q6H500  — RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
  • TrEMBL:  A0A0D3F1E5  — A0A0D3F1E5_9ORYZ; Uncharacterized protein
  • TrEMBL:  A0A0E0G250  — A0A0E0G250_ORYNI; Uncharacterized protein
  • TrEMBL:  A0A0E0NAK6  — A0A0E0NAK6_ORYRU; Uncharacterized protein
  • STRING:  ORUFI02G05790.1  — (Oryza rufipogon)
  • STRING:  ONIVA02G06040.1  — (Oryza nivara)
  • STRING:  OBART02G05680.1  — (Oryza barthii)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >KN541602.1_FGP002|Oryza_longistaminata|bZIP|KN541602.1_FGP002
    GTGTTGTGCCTCAACATTTTTTTCTATATTTTTCTGAATATCCATGAGTTGTTGATCAAGTGCATATCTGAAGATATGGGTTTCTCTATTGCAAGGCCTATTGCCACATACCTCATCTACCGATGCCTGATCCATTGGAAATCATTTGAAGAGGACAGGACAACAGTTTTTGATTGCATTATTCAGAAGATAAGTGCTGCAATTGAGAGCACCATCACAGGGGGCATTCCCAATCACATATGGCCCCAGTCCCAGAACCTGAACGCACGGCATCCTGCGGTCTCCACGACAATTGAGTCGCAGTCATCAATCTGTGCAGCAGCAAGTCCCACATCAGCTACCAATCTGAACATGAAGGAGAGCCAAATTCTGGGAGGCACAAGTGGTTCGGATTCTGAAAGTGAATCGCTGTTGGATATAGAGGGTGGTCCATGCGAACAAAGCACGAACCCGTTGGACGTGAAGAGAGTGAGAAGGATGGTGTCCAATCGGGAGTCTGCTCGGCGATCGAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGTCACAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACGGATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAGAATCCTCAAATCAGACGTTGAGGCCCCCTGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGGCTGGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGCGTGCCGCGTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGACGACCCCTTCACGGCCGGGCTGTCCCCGCCGGAGCAGTTGCAGATGCCCGGCGGCGAGGTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCGGCATGTCCAAGTGA
Protein Sequence:
  • >KN541602.1_FGP002|Oryza_longistaminata|bZIP|KN541602.1_FGP002
    VLCLNIFFYIFLNIHELLIKCISEDMGFSIARPIATYLIYRCLIHWKSFEEDRTTVFDCIIQKISAAIESTITGGIPNHIWPQSQNLNARHPAVSTTIESQSSICAAASPTSATNLNMKESQILGGTSGSDSESESLLDIEGGPCEQSTNPLDVKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDVEAPWVKVKMAEDMVARGALSCGLGHLGGLSPALNPRQACRVPDVLAGLDYAGDDPFTAGLSPPEQLQMPGGEVVDAWGWDNHPNGGMSK