Gene Details:

  • Gene ID: KN538687.1_FGP200
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Oryza longistaminata
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015638714.1  — basic leucine zipper 23
  • Refseq:  XP_025881179.1  — basic leucine zipper 23
  • Refseq:  XP_025881180.1  — basic leucine zipper 23
  • Refseq:  XP_025881181.1  — basic leucine zipper 23
  • Refseq:  XP_025881182.1  — basic leucine zipper 23
  • Swissprot:  Q8GTS2  — BZP23_ARATH; Basic leucine zipper 23
  • TrEMBL:  A0A0D3G9C5  — A0A0D3G9C5_9ORYZ; Uncharacterized protein
  • TrEMBL:  A0A0E0PPE3  — A0A0E0PPE3_ORYRU; Uncharacterized protein
  • TrEMBL:  I1PWW4  — I1PWW4_ORYGL; Uncharacterized protein
  • TrEMBL:  Q65X73  — Q65X73_ORYSJ; Os05g0495200 protein
  • STRING:  OMERI05G18470.1  — (Oryza meridionalis)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >KN538687.1_FGP200|Oryza_longistaminata|bZIP|KN538687.1_FGP200
    ATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTGATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATCCTCCTGGTCCGTCGGCAACCACGCACACCCACACATGCTTGCACACGCACACCCAGGTCTTCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGCCCCGGAGGCCGCTGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTTTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATTAGGTTAAGGAGCATCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGCGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTGAGTGA
Protein Sequence:
  • >KN538687.1_FGP200|Oryza_longistaminata|bZIP|KN538687.1_FGP200
    MDDVPSQLLFSHPEVPDSFDDFLNNITTCTHTHTCNPPGPSATTHTHTCLHTHTQVFASGSGEDDIKEDLTKPRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQGHAALEAEVIRLRSILLDVRGKIDMEIGTFPYQKPCSVGSVACTDPGMCFNGNSEIGGVWEECSRPAGADRMIDKDGSMSQEIDIPGPVHSISMDVVGSLVTSASLSE