Gene Details:

  • Gene ID: Glyma.12G184500.2.p
  • Gene Name: GLYMA_12G184500, LOC100775461
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Glycine max
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_003539469.1  — transcription factor TGA9 isoform X2
  • Refseq:  XP_028192397.1  — transcription factor TGA9-like isoform X2
  • Swissprot:  Q93XM6  — TGA9_ARATH; Transcription factor TGA9
  • TrEMBL:  A0A0B2R1S2  — A0A0B2R1S2_GLYSO; TGACG-sequence-specific DNA-binding protein TGA-2.1
  • TrEMBL:  K7LVR2  — K7LVR2_SOYBN; Uncharacterized protein
  • STRING:  GLYMA12G30990.3  — (Glycine max)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >Glyma.12G184500.2.p|Glycine_max|bZIP|Glyma.12G184500.2.p
    ATGGCGAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCAGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTCACGGAATTAACACTCCTGCATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGAGGGCAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGTTGGTTCAAAGTCAGGAGGAGAAAGCACTGATTCAGGTCTCTCTAGCAAAACTGAGCCCCCCTTTGAGGCAGAATCTCCCATAAGTAAAAAGGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCAGCATCTGCAGCATAGACAGCAACTTCAACAGGAGATGGCAAGTGATGCCCCAAGAGCAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGAAAGGGAGCTGGTTCTACATCAGACAAACCACTTGATGCAAAGACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTTAACCAGATAGAACAAGAACTTCAAAGAGCACGCCCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGTACTGTAAGCTCGGGAGCCGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAAGATCACAGACTAATGGGGGAGCTGAGGAACGGGTTGCAAGCACCGTTATCAGACAGTGATATGAGAGTGATGGTGGATGGATATCTTTCTCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCTGATGTCTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGTTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCATGATGCTGATTCAGCAGTTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAAGCATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGACTTGAGCAGTTGCAGCAGTCACTTGTGGACACCATAGCTGGAGGCCCAGTGGTTGATGGTGTTCAACAAATGGTCGTTGCCATGAGCAAGCTTGCCAATCTTGAAGGTTTTGTTCGCCAGGCTGATAATTTGAGGCAGCAAACTCTTCATCAGCTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGCTTTATTGTTATTGGAGAGTACTATGGACGTCTTCGTGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAACGACGATAACTCATGCCAAACAACTACGGAAATGCAAATAGTCCAACATTCTCAGAATTATTTCTCAAGTTTCTGA
Protein Sequence:
  • >Glyma.12G184500.2.p|Glycine_max|bZIP|Glyma.12G184500.2.p
    MASHRIGELGLSESGPSSHHIPYGVLHGINTPASSLINQGSAFDFGELEEAIVLHGVKGRNDEGKASLFTARPAATLEMFPSWPMRFQQTPRVGSKSGGESTDSGLSSKTEPPFEAESPISKKASSSDHHQAFDQQHLQHRQQLQQEMASDAPRAASSQNQSAAKSPQEKRKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLNQIEQELQRARPQGLFVDCGGVGSTVSSGAAMFDMEYARWLEEDHRLMGELRNGLQAPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLIMMLIQQLEPLAEQQIMGMYGLKHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLINDDNSCQTTTEMQIVQHSQNYFSSF*