Gene Details:

  • Gene ID: Glyma.11G108100.2.p
  • Gene Name: GLYMA_11G108100
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Glycine max
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  NP_001237296.2  — bZIP transcription factor bZIP121
  • Refseq:  XP_006590381.1  — bZIP transcription factor bZIP121 isoform X1
  • Refseq:  XP_006590382.1  — bZIP transcription factor bZIP121 isoform X1
  • Refseq:  XP_014619019.1  — bZIP transcription factor bZIP121 isoform X1
  • Refseq:  XP_014619020.1  — bZIP transcription factor bZIP121 isoform X1
  • Refseq:  XP_028190347.1  — basic leucine zipper 23-like
  • Refseq:  XP_028190348.1  — basic leucine zipper 23-like
  • Refseq:  XP_028190350.1  — basic leucine zipper 23-like
  • Refseq:  XP_028190351.1  — basic leucine zipper 23-like
  • Refseq:  XP_028190352.1  — basic leucine zipper 23-like
  • Swissprot:  Q8GTS2  — BZP23_ARATH; Basic leucine zipper 23
  • TrEMBL:  A0A445HZT3  — A0A445HZT3_GLYSO; Basic leucine zipper 23 isoform A
  • TrEMBL:  I1LJ22  — I1LJ22_SOYBN; Uncharacterized protein
  • STRING:  GLYMA11G11540.4  — (Glycine max)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >Glyma.11G108100.2.p|Glycine_max|bZIP|Glyma.11G108100.2.p
    ATGGACGACGGCGAGCTGGATTTCTCGAACCATGAAGTGTTTTCGAGTCCGAACATGGGGGAGCTTCCGAGCAGCGGTTCAATGGACAGTTTCTTCGACGAGCTTCTCAAGGACACGCACGCGTGCACCCACACCCACACGTGCAACCCTCCCGGCCCCGATTTCTCCCACACTCACACGTGCTACCACGTACACACCAAAATCGTCCCCGCCCCTGAGGAGGACCAGGTCGCTACTGATGACACCGCCGAGTCCGCCGAGAAAAAGTCGTCGTCGAAGAAGCGGCCTCTGGGGAACAAAGAAGCCGTCCGGAAGTACCGGGAGAAGAAGAAGGCGCGTGCGGCGTCGCTGGAGGATGAGGTTGTGAAGTTGAGGGCTCTGAACCAGCACTTGATGAAGAAGCTGCAGGGGCAGGCGGCTCTCGAGGCCGAAATAGCCAGGCTCAAGTGTTTGTTGGTTGACATAAGGGGGAGGATTGAAGGGGAAATTGGGTCCTTTCCCTATCAGAAAACAACAACAACAACGCCGAATCCGGTGGCTGGTTCTTATGTGATGAACCCTTGTAACTTGCCGTGTGATGATAGGGTGTATTGCCTTCACCCTGATGGGAGGATTGGGGAGACTGCGGCTTTGAATGGGGAAGAGTTTGATGGTTGTGAATTTGAGAACCTGCAGTGTCTGGCAAGCCAGAATTTGGGGCTCAAGGATCTTCGCGCTTGTGGGGTTGGGGTTGGACACACAGGGTCTAATGTAAATTCTTCTGCCTTATCAAAGAAAAGAAAAGGGGGATCTCGTGCTGCAACAGCTGGTTGA
Protein Sequence:
  • >Glyma.11G108100.2.p|Glycine_max|bZIP|Glyma.11G108100.2.p
    MDDGELDFSNHEVFSSPNMGELPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPEEDQVATDDTAESAEKKSSSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKTTTTTPNPVAGSYVMNPCNLPCDDRVYCLHPDGRIGETAALNGEEFDGCEFENLQCLASQNLGLKDLRACGVGVGHTGSNVNSSALSKKRKGGSRAATAG*