Information report for Genemark1.5498_g
Gene Details
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Functional Annotation
- Refseq: XP_005646580.1 — hypothetical protein COCSUDRAFT_56469
- TrEMBL: I0YUG7 — I0YUG7_COCSC; Uncharacterized protein
- STRING: XP_005646580.1 — (Coccomyxa subellipsoidea)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla013824
- Cucumis melo: MELO3C008356P1
- Daucus carota: DCAR_010092
- Gossypium arboreum: Cotton_A_04420_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A02G0113, Gh_D02G0148
- Medicago truncatula: Medtr6g034945.1
- Panicum virgatum: Pavir.2NG433600.3.p, Pavir.2NG433600.2.p, Pavir.2NG433600.1.p
- Pyrus bretschneideri: Pbr005556.1, Pbr005861.1, Pbr028080.1
- Setaria italica: Seita.2G432800.1.p
- Setaria viridis: Sevir.2G445800.1.p
- Solanum tuberosum: PGSC0003DMP400050715
Sequences
CDS Sequence:
- >Genemark1.5498_g|Coccomyxa_subellipsoidea_C-169|bZIP|Genemark1.5498_g
TGGAGGAGCCTCCCAGCAGCAGTGCTCCCCCAGGGCCTCCAGCCAGAGCGCCCTCCCCATCAATGCTCTCCATCTACCTCCAGCGCACTGCATCTGGCCGGCTGACCTCTGCAGCCCCTCAGCCTAGGCAGGATCCCCCTGCACAGCCCTCCTCTGGGGATCCCTCCCCGAGGCAGCTGCCACCACAGCCCCCCTTGCAGCAGCATCAGGGGGTGATCCTTTCTAGCCCATTTTACACCCAGCAGCGTGAGGGCTTTCTCCTCAGCAGCAGCAGCATCCCTATCTCACAGCGCTCATCCTCACAGCCGGCCCTCAGCCAGAGCTCCACCGACCCCCTGCCCGGCGGCCAGCCCAGCAGGCAGCCTACAGGCACCGCAGCGTTCAGCCCGAGCCGCTCCTCCTTCGGGTCGGGTTACTCGCTGCAGAGCGGCGGAGGGGATGACACCGGCGCGGCTGAATCTCACAATCCCGGCGGCGGCGGCGGCCTGGGGCAGCCGCCCGGGGGATATGCCTATGGCGCAGCCTTTCCGGGTGTCAGCGATGAGGATCTGGCTGCCATGGACCCCAAGCGCGCTAAGCGGCTCATCGCCAATCGACAGAGCGCGCAGCGTTCGAAGGCGCGCAAGCTGCGGCACATAATGCAGCTGGAGGAGGAGGTGCAGACGGTGCAGGGCATCAGTGCACAGCAGCAGGCCACCATCGGCAGCCTCCAGCAGGAAGCCGTCCTGCTCACCGCGAGTAATCGCCAGCTCAGCGTCCAGGTGGCGGACCTGCAGGACCAGCTGCACCGGCAGGAGGCCTTCACCGAGTTAGTCACCGCCGAGCTGAGACGACTCAGCGCCCTCGCTGGCGAGCCCGCCCAGCTGCCCACATTCTCCCCTGCCGCCCTCCAGGAACAGCAGCAGTTGCAGGCGCAGCAGCTGATGCCTGGGGGGCAGCTGCCGCCGCAGCTGTCAGACATCGCCCTGCAGCAGCAGCTGGCCTCCCAATACGGCCTCCCCGGCTTTGCAGGCACGGCACCCTCTCTCAGAAACCGGCCCGTTGAATTGTGTAGCGGATTCCAGCAGTACCCGGTGGGAGTGCAGCAGTTCCAGCCGGCCTACGTCCCCCAGTTCCCCATGGCACAACTCCCCGCCATGCAGCCGGTGCCGCAGCAGCGGGGCGGGTTACTAATGGAGCCCCCCCCGCCAGGGGGCGCCTACTACCAGCCCCTGCCGCAGCAGCAGCGCCAAAGCAGGCAGCGGCAGCAGCACCCGCGGCGGCAGCCGCCGCCGCCGCAGCCGCCAACCCAGCCGCCGCCGCAGCTCGACGGGGGCCGGCAGCCGGCCCCGGAGCGGCCCTCTGTGGCCATGCAAGGCGCGGCAACGCCACGGGAGCAGAACACACTCGCATCGCACCCCTCCCTCGAGCGCCCCGCCTCCGCGCCGCTGCCGGCCGCCGTGGCCGACGCGGCGGCGGCAGCCGCCGCGGAGTCGTCGGCCGCGGAGGGGACGCGCGCCACGGCTGGGCCGACATCCACCGAGGCGGTGCGCGACGCGGCCATTGCCGCGCTCGCTCTGGCGGAGCGCCGTAGTGTCCGGTTCTCGGCCGATCTCCCCGGTTCTGAGGCGGCGGCCGAGTCGCGGCGGCAGGCGCTGGCGACGGCCGGCCGGGGCAACACGTTCCCGCTGGCGAGAGAGGACGCCGCGGCGCGACGCGCAGCCGTGCGGACCCTGTCTGCGCCCGTTCCTTCCGCTGCCGGCAGCGGCGCGGGCTCCGGGGGCGCGCCCGCCCGCGTGGCGGCCGAGGCGGCCGGCCCGGCGGCTGCCGCGCAGCCGGACCCGTTCCGCGTGTCCGTGCCGGCCAGCGCGTTCCAGATCGAGGAGCGCCGCTCCGCGCAAGACACGCCCTCCTGGAGGCAGCAGCAGCAGCAGGTGCAGCACTTCCCATCGGTGCCAGAGGCGGAGGATGTGCAGAGCTGGCAGCAGCCGCCGCAGGTCGGCTGGCCGCTCGGTTCGCGCGCGCAGCAGCCCTACCCGGTCGCCGGGGGCCCGGTGGGGAATGTCATGCAGGCCTTCCGGGGCCTCTCCATGCAGGGCTCAGATCCGGCGGCGTTGCCTCCGAGCGGGTCTGGGCAGCAGAGGGGTTCCCTGCACCAGCCATTCAGCATGCAGCCGGGCGGCCACTACGGGAACCTGTCATGGGACGAAATGATGCGATCCCTGTCAGACCCCGTCTTCCAGACCGGCCAGGACGGCGCGCCCATCATTCCCCCGGGTTTATATTCCCAGGGGATGGAGGGCATGGGAATGGCCGGCAGGCCCCCCTTTGAGAGCTTCTACAACGTCGAGCAGACAGACCCCGCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCAGCAGGAGCAGTTGCGGGGTGACGAGGGCTCACGTCAGCGGTGA
Protein Sequence:
- >Genemark1.5498_g|Coccomyxa_subellipsoidea_C-169|bZIP|Genemark1.5498_g
MEEPPSSSAPPGPPARAPSPSMLSIYLQRTASGRLTSAAPQPRQDPPAQPSSGDPSPRQLPPQPPLQQHQGVILSSPFYTQQREGFLLSSSSIPISQRSSSQPALSQSSTDPLPGGQPSRQPTGTAAFSPSRSSFGSGYSLQSGGGDDTGAAESHNPGGGGGLGQPPGGYAYGAAFPGVSDEDLAAMDPKRAKRLIANRQSAQRSKARKLRHIMQLEEEVQTVQGISAQQQATIGSLQQEAVLLTASNRQLSVQVADLQDQLHRQEAFTELVTAELRRLSALAGEPAQLPTFSPAALQEQQQLQAQQLMPGGQLPPQLSDIALQQQLASQYGLPGFAGTAPSLRNRPVELCSGFQQYPVGVQQFQPAYVPQFPMAQLPAMQPVPQQRGGLLMEPPPPGGAYYQPLPQQQRQSRQRQQHPRRQPPPPQPPTQPPPQLDGGRQPAPERPSVAMQGAATPREQNTLASHPSLERPASAPLPAAVADAAAAAAAESSAAEGTRATAGPTSTEAVRDAAIAALALAERRSVRFSADLPGSEAAAESRRQALATAGRGNTFPLAREDAAARRAAVRTLSAPVPSAAGSGAGSGGAPARVAAEAAGPAAAAQPDPFRVSVPASAFQIEERRSAQDTPSWRQQQQQVQHFPSVPEAEDVQSWQQPPQVGWPLGSRAQQPYPVAGGPVGNVMQAFRGLSMQGSDPAALPPSGSGQQRGSLHQPFSMQPGGHYGNLSWDEMMRSLSDPVFQTGQDGAPIIPPGLYSQGMEGMGMAGRPPFESFYNVEQTDPAQQQQQQQQPPQQEQLRGDEGSRQR*