Information report for Genemark1.4306_g
Gene Details
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Functional Annotation
- Refseq: XP_005647704.1 — hypothetical protein COCSUDRAFT_63523
- TrEMBL: I0YXP1 — I0YXP1_COCSC; Uncharacterized protein
- STRING: XP_005647704.1 — (Coccomyxa subellipsoidea)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_29100_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D12G0618, Gh_A12G0608
- Juglans regia: WALNUT_00011718-RA
Sequences
CDS Sequence:
- >Genemark1.4306_g|Coccomyxa_subellipsoidea_C-169|bZIP|Genemark1.4306_g
ATGTCAGAGCAGGAGGCAGCACCAGCAAGCCCCGCGGAGGACTCAGAGGCCACCGCCAGTGATTCCAGCCGCCACGCTGCAGACGAGAAACACGATGGCTCGCCAGTGAGCACAGCCACGGACGATGCCAGGCAGGGGCGCAGCCGAAGGGGGCTCAGGGCACGGCCGGAGCAGGCTCTGCCGGTGAGCAGGCATGGCGCACATGAGATCTCGGCACGCACCGGCCCGCCGGGACGCGCCGCCGCAGCCGCCAATGTTGTGAACACCCCGGGGGTTGCTACGCCGAGCCTGTCGGCCCCCCTTCTGGGACCGGCTCAGGCCACACCGTCGACCGCGTCCGGTCAGCTTGCACCCGGGGAAGCTGCGCTGCACCATGTGCTCAGCGGGCACAGCGCGGCCACCTTCCTCGACGCCTCCGGATCGCCGCGGTGGCAGGGGAGCTCCGGCAGCGCGACTTTGAGCGGCCGTAACTCGCTGCTGAGCTCGCTGGACTCGCTGCTGGCCGCGCGCCAAGCGTCCGCGCCCGTCGGCGGCGCACGGCGGCAGCCGGCCACCGGCGCCGAGCGGATGCTGGCCGGGCTGTTGGGCGCGCTGCGCCACCAGCAGCGCACCGCGGAGGGGGGCCCCGGTCCCCCCGCTGCCGCTGCCGCGGCCGCGCCGCTGGGGGCCGTCGCCCAGCAGGTGTCCGATGCCAACACCATCCAGGCGTTCCTGAATTCAGTGGGCTTCAAGCTGCGCACGCCCGACCAGGGTGACAGCACAAACGCGCCGCCGCCGTCAACGCAGCTGCCGCGCCAGCCGTCATCCCTCCCCAAGGGGAAGGAGGCGGTAGCTGAGAGCGCAGAGGCACCGGCGCCACAGGGCAGCCGGGGCCTGCAGAGGACCAACAGCCTTCCCATCCCTGACCCAGGCACGCCCCCACCACACCATCCGCAGGAGAGCGCCACGGTGGCATTCCAGCTGGGCCAGCCGATCACCAACCCCTTCGCGGGCTTCGCCAATGACTTGTTGCAGCGCCAGGCGTCCTCGCTTGCCTCACACCCGCCCCTGCACTGGAGCACAGCTGCTCTGGCAGCTGCCGCGCAGCCGCCGTCGGCCGCCGGCGCCGCGCAGCAGGCACGCCCTCCGACGAGCTCTTTTGTATTCCTGCAGCCCCCCAAATCGCTGCCAGTCAACTCGGACACAGCGTCGAGGCGGAGCGGGGATGCGCAGCGCGCCCCCAGTGGCGGCAGGGGAATTAGCAGTAAACGCAAGGCCGGAGGGGAGGCCCCTGCAGAACAGTCCGCTGAGTCACTGCCCCGACCCAACCTCACCCATGCGCTTGGGGATGCTCTGGACTGGTCAGCCAGCAGCAAGCCAGGGCTGCCGCAGCAGTGGTCAGCACTGCAGGCTGCAGCATCCGCACCCACAGTCGCCGCTGCAGGCCAGGACCTCCAGCGGCACGCTGGGGACTTCCTGCGGCAGATGCAGGAGAGCATGCCGGCCGCCATGCGCATCTCACAGTCACTGCCGCCACGCTCTTTGCTCACCGCCGACTCCTACCGGGCCCTCGAGCGCTCCCTCGATGCTGCCGGCCAGGGCTCCGGGCGGGCGATAGCGGAGGAGGTGCAACGTCTACTGGGGCGTGCGCGTGCGCAGGCGTCGGCGGCTGGCGCTCCCCGGGAGGCGGCGGCTGCCGCGGCTCGGGCCGACGAAAGCGACGCGGGCGCCGATGACAGCGAGGCACCGCGGGAGGGCGAGCCTGCAGCAGACACCCTTGAGGATCGCATCAAGCGCCGGCGATTGAGCAACCGGGAGTCGGCGCGGCGAACGCGGCAGCGGCGCAACAGCGAGATGGCGGCCCTACGCGGCACCAACGAGGCGTTGCAGGCAGATGCCGAGAAGCTTCGCGCGCAGGTGGCTGACCTGGCGGCCGCCAACCATGCGCTGCTTTCCTCCATCCCCGGCCTCGGCGACCCCAAGCTGCAGGAACTGGCGGCGGAGAATGCAGCGCTGAAGCTTGAACTGCTGGAGCTGCGCGCGGCGGTCACCCAGCACCTGGCAGCACATGCCAGCCAGCTGCCCTACGCGCAGAGCATCGCCCTCTCACAGGTCATTGAGCAGGCCAGGAGGCAGGCCAACGCTGAAGAGAACGAAGAGGGTGCTTAG
Protein Sequence:
- >Genemark1.4306_g|Coccomyxa_subellipsoidea_C-169|bZIP|Genemark1.4306_g
MSEQEAAPASPAEDSEATASDSSRHAADEKHDGSPVSTATDDARQGRSRRGLRARPEQALPVSRHGAHEISARTGPPGRAAAAANVVNTPGVATPSLSAPLLGPAQATPSTASGQLAPGEAALHHVLSGHSAATFLDASGSPRWQGSSGSATLSGRNSLLSSLDSLLAARQASAPVGGARRQPATGAERMLAGLLGALRHQQRTAEGGPGPPAAAAAAAPLGAVAQQVSDANTIQAFLNSVGFKLRTPDQGDSTNAPPPSTQLPRQPSSLPKGKEAVAESAEAPAPQGSRGLQRTNSLPIPDPGTPPPHHPQESATVAFQLGQPITNPFAGFANDLLQRQASSLASHPPLHWSTAALAAAAQPPSAAGAAQQARPPTSSFVFLQPPKSLPVNSDTASRRSGDAQRAPSGGRGISSKRKAGGEAPAEQSAESLPRPNLTHALGDALDWSASSKPGLPQQWSALQAAASAPTVAAAGQDLQRHAGDFLRQMQESMPAAMRISQSLPPRSLLTADSYRALERSLDAAGQGSGRAIAEEVQRLLGRARAQASAAGAPREAAAAAARADESDAGADDSEAPREGEPAADTLEDRIKRRRLSNRESARRTRQRRNSEMAALRGTNEALQADAEKLRAQVADLAAANHALLSSIPGLGDPKLQELAAENAALKLELLELRAAVTQHLAAHASQLPYAQSIALSQVIEQARRQANAEENEEGA*