Information report for EcC054802.230
Gene Details
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Functional Annotation
- Refseq: XP_010055061.2 — PREDICTED: common plant regulatory factor 1 isoform X2
- TrEMBL: A0A059C013 — A0A059C013_EUCGR; Uncharacterized protein
- STRING: XP_010055062.1 — (Eucalyptus grandis)
- GO:0005975 — Biological Process — carbohydrate metabolic process
- GO:0006032 — Biological Process — chitin catabolic process
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006412 — Biological Process — translation
- GO:0006887 — Biological Process — exocytosis
- GO:0007020 — Biological Process — microtubule nucleation
- GO:0031122 — Biological Process — cytoplasmic microtubule organization
- GO:0048278 — Biological Process — vesicle docking
- GO:0000930 — Cellular Component — gamma-tubulin complex
- GO:0005840 — Cellular Component — ribosome
- GO:0032040 — Cellular Component — small-subunit processome
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0003735 — Molecular Function — structural constituent of ribosome
- GO:0003924 — Molecular Function — GTPase activity
- GO:0004568 — Molecular Function — chitinase activity
- GO:0005515 — Molecular Function — protein binding
- GO:0016853 — Molecular Function — isomerase activity
- GO:0030246 — Molecular Function — carbohydrate binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >EcC054802.230|Eucalyptus_camaldulensis|bZIP|EcC054802.230
ATGGGGAACAATGAAGAGACGAAGTCATCCAAATCTGATAAATCGTCTTCACCAGTACCTCTGGATCAGACGGGTGTTCATGTTTATCATCCTGATTGGGCTGCTATGCATGCATACTATGGTCCAAGAGTTGCTCTTCCGCCTTATTATAATTCTGCTGTATCATCTGGTCATGGTCCTCATCCCTACATGTGGGGTCCACCACAGCCTATGATGCCACCATATGGGCCACCTTATGCTGCAATATACTCACATGGAGGTGTTTATGGACATCCTGCAATTCCTCTTACTCCGACTCCCTTGGCTGCGGAAACTCCTAAAAAGTCGTCTGCTAATTCTGATAATGGACTGGTGAAGAAGTTGAAAAGTTTTGAAGGGCTTGCAATGTCAATAGGCAGTGGGGGGGATGCAGACAGTGCTGATGATGGGACTGATAAAAGGTCATCACAGAGCGCAGACTCGGGAGACTCAAGTGATGGGGATCAATCAGGGGCAGATAAAGCCAGGAGGAAAAGAAGCCGTGAAGGAACTTCATCCAATGGCGATGGAAAATCTGAAGTGCAAGGAAAGGTTGCTCGGGAGGTGGATGCTGCTTCTGAGAATGTGTCCGGTGGAGCCATCGAACGTCCCAGAGCCACGGGAAAATTGGCTGCGCCTGTAAACTCGCCCAGCATGTCCTCCTCATCATTGGACCTGAAGAATTCTTGCATGGATGCAAATGCCAACCCTTTGAGCATTTTGCAACCTGGTGTAGTGCCACCTGAAGCCTGGTTACAGAATGAAAGAGAACTGAAAAGGGAGAGGAGGAAACAGTCGAACCGTGAATCTGCTAGAAGATCAAGACTGAGGAAGCAGGTATGGATGACGTGTGACAGAAAGTGTTATCGTGCTGTTTTCAGTCTTTCTGTTTGTCATTTTCATCAACGGGTATGTCACTTAAAGGGAATGGATTTTCCTCTTAATGTTCAGGCTGAAACTGAAGAACTTGCCAAAAAGGTGGATTCTCTGAGTGCCGAGAATAGGGCTCTTAAATCTGAAATTAGTCGACTAACCGAGAACTCAGATAAATTGAGGCTAGAAAATGCCACATTGATGGAAAGACTGGAAAATGCACAGGGAGTGGAAAAGGCGGTTGAATCACTGGGTAAATTCAACGACAATGGGCTTCTCTCGGACAAAACAGAGAACTTACTTTCAAGGGTAAACAACTCTGGTGCCGTTGATCGAAGAAGTGAAGATGAGGGAGAAATTTATGAAAGGAAGTCGAATTCCAGTGCCAAGCTTCACCAACTTTTGGATTCAAAACCCAGAACCGATGCTGTGGCTGCTGGC
Protein Sequence:
- >EcC054802.230|Eucalyptus_camaldulensis|bZIP|EcC054802.230
MGNNEETKSSKSDKSSSPVPLDQTGVHVYHPDWAAMHAYYGPRVALPPYYNSAVSSGHGPHPYMWGPPQPMMPPYGPPYAAIYSHGGVYGHPAIPLTPTPLAAETPKKSSANSDNGLVKKLKSFEGLAMSIGSGGDADSADDGTDKRSSQSADSGDSSDGDQSGADKARRKRSREGTSSNGDGKSEVQGKVAREVDAASENVSGGAIERPRATGKLAAPVNSPSMSSSSLDLKNSCMDANANPLSILQPGVVPPEAWLQNERELKRERRKQSNRESARRSRLRKQVWMTCDRKCYRAVFSLSVCHFHQRVCHLKGMDFPLNVQAETEELAKKVDSLSAENRALKSEISRLTENSDKLRLENATLMERLENAQGVEKAVESLGKFNDNGLLSDKTENLLSRVNNSGAVDRRSEDEGEIYERKSNSSAKLHQLLDSKPRTDAVAAG