Gene Details:

  • Gene ID: Cotton_A_20172_BGI-A2_v1.0
  • Gene Name: F383_15776
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Gossypium arboreum
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_016692135.1  — PREDICTED: transcription factor HY5
  • Refseq:  XP_017624371.1  — PREDICTED: transcription factor HY5
  • Swissprot:  O24646  — HY5_ARATH; Transcription factor HY5
  • TrEMBL:  A0A0B0MAN4  — A0A0B0MAN4_GOSAR; Transcription factor HY5-like protein
  • TrEMBL:  A0A1U8JPE9  — A0A1U8JPE9_GOSHI; transcription factor HY5
  • TrEMBL:  A0A2P5XKP1  — A0A2P5XKP1_GOSBA; Uncharacterized protein
  • STRING:  Gorai.004G274100.1  — (Gossypium raimondii)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0009737  — Biological Process — response to abscisic acid
  • GO:0009740  — Biological Process — gibberellic acid mediated signaling pathway
  • GO:0010017  — Biological Process — red or far-red light signaling pathway
  • GO:0010099  — Biological Process — regulation of photomorphogenesis
  • GO:0010114  — Biological Process — response to red light
  • GO:0010218  — Biological Process — response to far red light
  • GO:0010224  — Biological Process — response to UV-B
  • GO:0031539  — Biological Process — positive regulation of anthocyanin metabolic process
  • GO:0042753  — Biological Process — positive regulation of circadian rhythm
  • GO:0080167  — Biological Process — response to karrikin
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003690  — Molecular Function — double-stranded DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >Cotton_A_20172_BGI-A2_v1.0|Gossypium_arboreum|bZIP|Cotton_A_20172_BGI-A2_v1.0
    ATGCAAGAACAAGGAACGAGTTCAATAGCAGCTAGTTCCTTGCCTTCAAGCAGTGAAAGATCTTCAAGCTCTGCTCTTCAAGTTGAAGTCAAGGAAGGTATGGAAAGTGATGAAGAGATCCGGAGAGTGCCTGAGATAGGAGGTGAAGCATCAGCAGCTCCGGCCGCCGGTCGTGAACCCGGTTCACTGACCCGACTGGACCGGCCTCAACCATCGGGTGAAGGCGGTCAGAGAAAGAGAGGGAGAAGCCCAGCGGATAAAGAAAACAAGCGCTTAAAGAGGTTGTTGAGGAACAGAGTATCAGCGCAACAAGCAAGGGAAAGGAAAAAGGCGTACTTGAATGAACTGGAAACCAGAGTTAGAGACTTGGAGAAGAAGAACTCTGAACTAGAAGAGAGGCTATCCACGTTGCACAATGAGAATCAGATGCTTCGACAAATAGTCAAGAACACAACTGCTAGCAGGAGAGGTGGAAATGGCAGTTCAAATGCAGCTGATGGAACCCTTTAA
Protein Sequence:
  • >Cotton_A_20172_BGI-A2_v1.0|Gossypium_arboreum|bZIP|Cotton_A_20172_BGI-A2_v1.0
    MQEQGTSSIAASSLPSSSERSSSSALQVEVKEGMESDEEIRRVPEIGGEASAAPAAGREPGSLTRLDRPQPSGEGGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVRDLEKKNSELEERLSTLHNENQMLRQIVKNTTASRRGGNGSSNAADGTL