Information report for CA06g22960
Gene Details
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Functional Annotation
- Refseq: NP_001311996.1 — transcription factor TGA2
- Swissprot: Q93XM6 — TGA9_ARATH; Transcription factor TGA9
- TrEMBL: A0A0N9H8B2 — A0A0N9H8B2_CAPAN; AILZ1
- STRING: Solyc06g074320.2.1 — (Solanum lycopersicum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Nicotiana benthamiana: Niben101Scf05491g02004.1, Niben101Scf02510g02007.1
- Nicotiana tabacum: XP_016446661.1, XP_016446660.1, XP_016469783.1, XP_016485811.1, XP_016485810.1, XP_016485809.1, XP_016485808.1
- Populus trichocarpa: Potri.009G164300.1
- Solanum lycopersicum: Solyc06g074320.2.1
- Solanum melongena: Sme2.5_03810.1_g00007.1
- Solanum tuberosum: PGSC0003DMP400012605
Sequences
CDS Sequence:
- >CA06g22960|Capsicum_annuum|bZIP|CA06g22960
ATGGCTAGTCAAGGAATAGGAGAGACTGGTTTGACAGACTCTGGACCATCATCACATTCACACCATAACCACAATATGCCATATGCTGTTTATAGGGGGATAAATCCTGCTAGCACAAGTTTCATTAATCAAGAAAGTTCTGGTTTTGATTTTGGAGAGCTAGAAGAAGCTTTTGTACTACAAGGATTTAAGATTAGTAATGATGAAGCTAAAGCATCTTTATATGCAGCAGCAGCAGCCACAGGGAAACCTGCTGCAACTCTGGAGATGTTCCCTTCTTGGCCTATGAGATTCCAACAGACCCCAAGAGAGAAGTCAAAATCAAGAGAAGAGAGTACTGATTCTGGTTCACTTTCAAGTAGAGTTCAACCCCATTTAGAGCCAGAATCACCCATCAGTAGAAAGGCATCTTCAGACCATCAACAAAATCAACTTCACATAACACACAAATCTCAAGAACAGCAACAGCAACTCCAAAATATGGCAAGTAATAATCCAAGAACAGGAGGTTTACAAACTGAACTAGCAGCTTCCAAATCCAACAGTGAAAAGAAAAAGGGTGCTGCTTCAACTTCAGAGAGGGTACTTGATCCAAAGACATTGAGACGTTTAGCTCAAAATAGAGAAGCAGCAAAGAAAAGCAGGATAAGAAAAAAAGCTTATGTACAACAGCTTGAAACAAGTAGGATGAGACTTTCTCAGCTAGAACAAGAACTTCAAAGGGCTAGCTCTCAGGGGATTTTCTTGGGAGGTGGTACTACTGCTGGTTCCAATATCAGCTCAGGTGCTGCAATATTTGACATGGAATATTCAAGGTGGTTGGATGATGATCAAAGGCACATGTCCGAACTTCGAACTGCATTACAAGCACATTTATCAGATGGTGATCTTAGACTAATAGTTGATGGATACATTGCTCATTACGACGAAATTTTCTGCCTGAAAGGAGTGGCAGCAAAATCTGATGTATTTCATTTAATTACTGGAATGTGGACAACTCCAGCTGAACGTTGCTTCCTTTGGATGGGTGGTTTTAGGCCTTCTGAGCTGATCAAGATGTTGATAGGACAATTGGACCCTTTAACAGAGCAACAAGTAGTTGGAATATACAGCCTCCAGCAATCTTCTCAACAGGCAGAGGATGCACTTTCACAGGGATTGGAACAACTACAACAATCTTTAATTGATACTATTGCCACTGCTTCTCTACATGATGGCATGCATCATATGGCTCTTGCTTTAGGCAAGCTCTCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGACAACAAACATTGCATCAGTTACACAGAATATTGACAGTTAGGCAAGCAGCCAGATGTTTCTTGGTGATTGGAGAATACTATGGTCGACTACGAGCTCTAAGTTCTCTATGGTTATCTCGTCCACGAGAGACATTGATCGTGGATGATAATTCATGTCAAACAATAACGGGGTTACAAATGGTACAATCTTCTCAGAACCACTTCTCAAATTTCTGA
Protein Sequence:
- >CA06g22960|Capsicum_annuum|bZIP|CA06g22960
MASQGIGETGLTDSGPSSHSHHNHNMPYAVYRGINPASTSFINQESSGFDFGELEEAFVLQGFKISNDEAKASLYAAAAATGKPAATLEMFPSWPMRFQQTPREKSKSREESTDSGSLSSRVQPHLEPESPISRKASSDHQQNQLHITHKSQEQQQQLQNMASNNPRTGGLQTELAASKSNSEKKKGAASTSERVLDPKTLRRLAQNREAAKKSRIRKKAYVQQLETSRMRLSQLEQELQRASSQGIFLGGGTTAGSNISSGAAIFDMEYSRWLDDDQRHMSELRTALQAHLSDGDLRLIVDGYIAHYDEIFCLKGVAAKSDVFHLITGMWTTPAERCFLWMGGFRPSELIKMLIGQLDPLTEQQVVGIYSLQQSSQQAEDALSQGLEQLQQSLIDTIATASLHDGMHHMALALGKLSNLEGFVRQADNLRQQTLHQLHRILTVRQAARCFLVIGEYYGRLRALSSLWLSRPRETLIVDDNSCQTITGLQMVQSSQNHFSNF*