Gene Details:

  • Gene ID: Bradi4g04720.1.p
  • Gene Name: BRADI_4g04720, LOC100829753
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Brachypodium distachyon
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_003579247.1  — ocs element-binding factor 1
  • Swissprot:  P24068  — OCS1_MAIZE; Ocs element-binding factor 1
  • TrEMBL:  I1IHI8  — I1IHI8_BRADI; Uncharacterized protein
  • STRING:  BRADI4G04720.1  — (Brachypodium distachyon)

Gene Ontology:

  • GO:0006971  — Biological Process — hypotonic response
  • GO:0009267  — Biological Process — cellular response to starvation
  • GO:0045893  — Biological Process — positive regulation of transcription, DNA-templated
  • GO:2000693  — Biological Process — positive regulation of seed maturation
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding
  • GO:0046982  — Molecular Function — protein heterodimerization activity

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >Bradi4g04720.1.p|Brachypodium_distachyon|bZIP|Bradi4g04720.1.p
    ATGTCGTCGTCGTCTCTGTCGCCGGGAGGGAGGCTGTCGGGGTCGGACGGCGACTCCGGCGGCGCGCCCATGGGCGGCGGCGGCGGGGACAAGCGCCGGGAGAAGCGGCGGCTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGCTGCGGAAGCAGCAGCACCTGGACGAGCTGGTCCAGGAGGTGGCGCGGCTCAAGGCCGAGAACGCGCGCGTGCTGGGCCGCGCCAACGACATCGCCGGCCAGTACGTGCGCGTCGAGCAGGAGAACACCGTGCTCCGGGCGCGCGCCGCCGAGCTCGGCGACCGCCTGCGCTCCGTCAACCAGGTGCTCCGCGTCGTCGAGGACTTCAGCGGCGTCGCCATGGACATCCAGGAGGAGTGCCCGCCCGACGACCCGCTGCTCCGCCCCTGGCAGATCCCCTACCCGGCCACCGCCATGCCCATCGCCGCCACCGCCACGCACATGCTCCAGTACTGA
Protein Sequence:
  • >Bradi4g04720.1.p|Brachypodium_distachyon|bZIP|Bradi4g04720.1.p
    MSSSSLSPGGRLSGSDGDSGGAPMGGGGGDKRREKRRLSNRESARRSRLRKQQHLDELVQEVARLKAENARVLGRANDIAGQYVRVEQENTVLRARAAELGDRLRSVNQVLRVVEDFSGVAMDIQEECPPDDPLLRPWQIPYPATAMPIAATATHMLQY*