Information report for Achn120161
Gene Details
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Functional Annotation
- Refseq: XP_028119766.1 — subtilisin-like protease SBT5.3
- TrEMBL: A0A2R6QW00 — A0A2R6QW00_ACTCH; Subtilisin-like protease
- STRING: XP_010089852.1 — (Morus notabilis)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006508 — Biological Process — proteolysis
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0004252 — Molecular Function — serine-type endopeptidase activity
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G04110
- Citrullus lanatus: Cla017696
- Cucumis sativus: Cucsa.241090.1
- Daucus carota: DCAR_020211
- Gossypium hirsutum: GhARF3, Gh_D01G2011
- Juglans regia: WALNUT_00019607-RA
- Oryza sativa: RSP1
- Petunia inflata: Peinf101Scf00921g03005.1
- Sesamum indicum: XP_011094356.1, XP_011094355.1
- Solanum lycopersicum: Solyc09g009490.2.1
- Ziziphus jujuba: XP_015898750.1, XP_015898749.1, XP_015898748.1, XP_015898747.1
Sequences
CDS Sequence:
- >Achn120161|Actinidia_chinensis|bZIP|Achn120161
ATGGTGTTTACGGAGTGCGAAATCATATCCAAAGGCGAGGTTGAGTCACCGTCCAAGAACCAGCCGTTCCCCTCGCTGGGACGACAGACGTCGATCTACTCCCTCACTCTCGACGAGTTCCAGAACACGCTTTGCGAGAGCGGGAAGAACTTCGGGTCCATGAACATGGACGAGTTCCTCAGCAGCATCTGGACTGCCGAAGAAAACCAAAACCAAAACTCGAACCCTGCCACCACGACTAGTAATAGTAACAATTTGCAGCTTTTGGCAAGTGAACAACTCAGCTTGACAAGACAGGGTTCTCTCACGCTTCCTCCGCCTTTGTGTCAGAAAACAGTGGAAGAAGTGTGGTCGGAGATACACAAGAGTCAGCAGGAACAACCACCGAATGGGGGCGATAGTAACAACAATGTTGACCAAAATCCCGGTTCTGCCCAACGGCAACTCACTATCGGAGAGATGACTTTGGAGGATTTCCTAGTTAGAGCAGGGGTAGTTCGGGAACAGTGTAATGTGGGACCGTCATCTCAGCAGCAGTATGGGTCGTACCAGAACAATAACAATCCTGGAGTTGGCCCCAGTTTTGTTTCGAGGCCCATGATGAGTTTAGGTGGTGGAGGCAGTGGTGGTAATATTAATATGCCTACCTACCAAACACTACCTCAGGGCAGTGTTGGTGGGGTAGGCGCCTCATCGGGATACATGGGAAATGGAAAGAGGAGTGGTGGTGGTTACACACCATCATCGTCCATGGTGTGTTACAGTGGGAGAGTTGGGAATGCCAGTGGTGGGGGTGGCGGTGGGGGGTATGGGCCGGTACAGGGGTTGGGGATGGGGTCGCCAGTGAGTCCGGTGTCGTCAGATGGGATGTGTGTGAGTCAAGTGGACGAAATGAATCAGTATGGGATGGATATGGGCGGGATGAGAGGAGGGCGGAAGCGGATCATAGATGGTCCAGTGGAGAAGGTAGTGGAGAGGCGGCAACGCAGGATGATCAAGAATAGAGAGTCAGCAGCGAGATCTAGGGCCAGGAAGCAGGCCTACACAGTTGAATTGGAAGCAGAATTGAACCAGTTGAAAGAAGAGAATGCCCAACTAAAACATGCTCTGTATATTGAGGACGCGCGGATGAGGGCTCTAACCAAGGCTCAAAAAGCTACAGAGAAATTGCGGCATTATATTGTTTACATGGGCACGCACTCATTACCGAATTCCGAAGCTGTAATCTCATCCAATCATGAACTGTTGGCTTCCGTAGTTGGCAGTGTTGGTGATGCCCATCAAGCCACAGTCCACCATTATCACAAGAGTTTCAGAGGTTTCTCTGCGATGCTAACACCAGAACAAGCAAATCAAATTGAAAAAAGCGATTCAGTAATTTCTGTTTTCGAGAGCACACTGCACAAACTCCATACCACGAGGTCATGGGAGTTTATGCAAGCCACTGGTAATCATAGCATATTCAGCAATTTTGCAGTGTATGGAGACTACGACGTGATCATCGGCCACATGGACAGTGGAATTTGGCCAGAGGCTCCAAGTTTCGACCCTTCGGGATTAGGTCCAGTGCCAAGCAGATTCAAGGGAGAGTGTGTGACCGGAGAAAATTTTTATTCGTGGCACTGCAACAGGAAATTGATTGGAGCCCGTTATTATTACGAAGGATTTGAGAGATCAGTGGGCCCTCTTGAATCAATAGGACGCAAATTCTATCGGTCACCACGCGATGATTTTGGACATGGTAGCCACACTGCTTCAACGGCAGCAGGGTCTTTGGTAACAAATATTCCTTTCATACGAGGAACAAGCACGCAAATTGCTAGAGGTGGAGCTCCCAATGCTAGGTTAGCAATTTACAAGGTGTGCTGGTTCAACTATTGCACCATATCAGATATCATGAAAGCATTTGACGATGCTATTCATGATAAGGTGGATCTCATAACCATCTCAGTTGGAGCCAAACCAAACCAAAATATCGTATATACAAATGACGGGTTTTCAATTGCCGCATTTCACGCATTCACGAATGGTATTCTCACTTCGGCTAGTGCTGGCAATGATGGATTATTAGGTTCTTTCACGGTTGAAAATTCTGCCCCATGGACTCTCACTGTCGCAGCTAGTTCAATTAGTCGAGATTTCGTTTCCACCGTGCAACTTGGAAACGGAATTGCTTTTGAGGGATATGGGATCAACCGTTTCCAAACGAATGGATATTATGGTGTAATTGCAGCAGGTTACGCAGCACTCGATGGTGTATCAACTGAAGCAGCCAGTTTTTGCAAGGAAAATACTCTTAATATAGAACGAATTAGAGGTAAGATTGTAGTTTGCTCCATGAAAAACGAGGTTAATGACGTGGTGGAGGAGAAGGCAAAAGTGGTAGCAGCAGGAGGCGGTGTCGGCATAATTTTGGTGGATGGAAATGGGTTGGAGACCATTTATGAAAATTCTATTCCCACTTGTGTAATAAATCAACAGGGGGCACGTAGTCTTCAAGACTACTTGTCTTCAACAAGGGAACCCATGGCCAGGATATCCCGATCCATGGAAAAGTTGAACACCAAACATCCAATGGTGGCCTCATTTTCTTCAAAGGGACCTGACAAATTAACACCAGAATCAATCAAACCTGATATTACAGCTCCGGGAGTAAACATCTTAGCAGCTTGGCCTTCCTTTTCATTAACCAACAACGTGAATGCTCCCACATTCCACGTCGATTCTGGCACTTCGATGGCTTGTCCTCATGTTTCCGGTGTGGCTGCCATGGTGAAAGCTCTCCACCCTAATTGGTCCCCAGCAGAAATCAAATCGGCGCTCATGACGACAGCGAAACAATTTGATAACACCGGCCAACCTATACGATCGATCACGGGGTTGGCTACCCCTTTTGATATGGGATCGGGACATTTGGATCCGAATGCGGCACTAAACCCTGGACTTGTGTATGATATGGGCAAGGAGGATGTTTTCTATTTCTTGTGCGACCACGGGATCAATGAAAGAATGCTGCAAAATATCTTTGGGGGTACAACTTATTGTCCACGCCAAAATCGTCCCTACGATCTCAATCTTCCTTCCATTGGGATTAACAATCTGATTGGAGGAACATCCGTCTCACGGAGAGTTACTTACCGGGGAAAGAAGAATGATCCCACCATTTTCGAGGTTGAAATTGAGCATCCTGAAGGTGTTTATGTTGAAGTCCGTCCAAACGTTCTGGATTTTTCAGATGGTCAAGAGACGAAGAGTTTCACGGTTAACTTTTACGTTCGAGAAAACTTAGGAAGACCTTCTTATGGGTACCTGACTTGGTACAACCGTGTTCACACGGTTAGGAGCCCGATTGCCATTATTAATGTTGCGTAA
Protein Sequence:
- >Achn120161|Actinidia_chinensis|bZIP|Achn120161
MVFTECEIISKGEVESPSKNQPFPSLGRQTSIYSLTLDEFQNTLCESGKNFGSMNMDEFLSSIWTAEENQNQNSNPATTTSNSNNLQLLASEQLSLTRQGSLTLPPPLCQKTVEEVWSEIHKSQQEQPPNGGDSNNNVDQNPGSAQRQLTIGEMTLEDFLVRAGVVREQCNVGPSSQQQYGSYQNNNNPGVGPSFVSRPMMSLGGGGSGGNINMPTYQTLPQGSVGGVGASSGYMGNGKRSGGGYTPSSSMVCYSGRVGNASGGGGGGGYGPVQGLGMGSPVSPVSSDGMCVSQVDEMNQYGMDMGGMRGGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHALYIEDARMRALTKAQKATEKLRHYIVYMGTHSLPNSEAVISSNHELLASVVGSVGDAHQATVHHYHKSFRGFSAMLTPEQANQIEKSDSVISVFESTLHKLHTTRSWEFMQATGNHSIFSNFAVYGDYDVIIGHMDSGIWPEAPSFDPSGLGPVPSRFKGECVTGENFYSWHCNRKLIGARYYYEGFERSVGPLESIGRKFYRSPRDDFGHGSHTASTAAGSLVTNIPFIRGTSTQIARGGAPNARLAIYKVCWFNYCTISDIMKAFDDAIHDKVDLITISVGAKPNQNIVYTNDGFSIAAFHAFTNGILTSASAGNDGLLGSFTVENSAPWTLTVAASSISRDFVSTVQLGNGIAFEGYGINRFQTNGYYGVIAAGYAALDGVSTEAASFCKENTLNIERIRGKIVVCSMKNEVNDVVEEKAKVVAAGGGVGIILVDGNGLETIYENSIPTCVINQQGARSLQDYLSSTREPMARISRSMEKLNTKHPMVASFSSKGPDKLTPESIKPDITAPGVNILAAWPSFSLTNNVNAPTFHVDSGTSMACPHVSGVAAMVKALHPNWSPAEIKSALMTTAKQFDNTGQPIRSITGLATPFDMGSGHLDPNAALNPGLVYDMGKEDVFYFLCDHGINERMLQNIFGGTTYCPRQNRPYDLNLPSIGINNLIGGTSVSRRVTYRGKKNDPTIFEVEIEHPEGVYVEVRPNVLDFSDGQETKSFTVNFYVRENLGRPSYGYLTWYNRVHTVRSPIAIINVA*