Information report for 900536
Gene Details
Functional Annotation
- Refseq: XP_002880367.1 — uncharacterized protein LOC9316434
- Refseq: XP_020884099.1 — uncharacterized protein LOC9316434
- TrEMBL: D7LL16 — D7LL16_ARALL; Uncharacterized protein
- STRING: scaffold_400037.1 — (Arabidopsis lyrata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT4G38900.3, AT4G38900.2, AT4G38900.1
- Brassica napus: GSBRNA2T00018899001
- Brassica rapa: XP_009117429.1, XP_009101923.1
- Raphanus raphanistrum: RrC5291_p1
Sequences
CDS Sequence:
- >900536|Arabidopsis_lyrata|bZIP|900536
ATGAACGGTCGTGGCAATAGGACTCCTTCAAGCACTCAATACCAGCAGAATCCTTTTAGCACCAACGGTGGCCAGAGCACAGGCATGTCACTGTCTCACCAGACTTCTCCGTCAACACTTTCTCAGGTCCCACCACTGATCCGTTTTCCAGCCGGGTCACCAGACTTCAGCCCCGGACCACGGTGTACGACTCAGCCGTTCCCTACCTACTCTGACTTCACTCAGACCAGTCCGTCGTTCCATTTCCATAATCCATTTGCACCGGGGAGCTCTACTCTGTCGTCTAGCTTCTCCAACTATCCCCTCACGAGTCCTTCACCGTCTGAGTTCCATAATCCATTGGCGCCGACAAGCTTTACTCCGTTCCCTACCTCCTCTGACTTCACTCAAACGAGTCCTTCATCGTCAACGTTCCATAACTCACAGGGGCCGACGATCTCTACTCCTTCGTCCAGCTTCTACTTTCCCCAGACGAGTCCTTCACCGTCGCCGGTGAGCTCTTCTACGCCGTTCAGTCATGACTCATTTATGCACTCCAACCCCGAACCATGGACGATACCTCAACCATCGCATGTGTTCTCATCCACGTCGTCAGGGAGCTCTACTCCGCCTTCGTTCCGTCGTGATTCCTTTCCCCGCTCATACCCTGGAAAAGGGTCGATGACTCATAGGCCTATACTTTCAGTCCTGCCGCCGTCGCCTGTCTACTGCTCTAATCCTATGGTGAGCTCATCTCCGACGTCAATCGGTCGTAAGTCAATCCCGCTGATGCACCCTTCTCCATCAGTACATGTGGCGAACAGAGACTCTTCCATTAGGTCTAACCAAAATCTTCATCCATTGCCTCCTCGGGTTCCAGTCAAGAGGTCTAACTCCGCCAAAGTCTCCCGCAGCAACACTCTACATTCAAGAAAGTCTCATAAACGGACCAATTCGATGGCCCCTCAGAGTTCTCCTGGATCGAGCTACCTTGAGCTATCAGATATGTTGGTTGGGGACTCAAGCTGTGGCGAGGAAGGCTTTGGAGAGTTGATCTATGATGAAGAAGCCATGAAGGAGTTCTGTTCTGAGTATATGATTCTGCATAACAATAACAATGGTGATCAGAATCAGAATGTTGATGTTTTGATGATAACCAATACTGCAGATTCGGGAGGTCCAGGCAACGCGAATGAGAGCAAGTTTAAAACTGGATCGACTACTTCGGGTGTCAAGAGAAGAGCAGGGAAAGAGATTGAACCTTCACGCCAACTCTATAGGAGTGCTTCAGCGGATACATGTTACAGTGACTCGATAAAGCGTAGGAATCTACAGGGTCAAGTTAGCAGTTCTGTTGGAAGAGGAGATAAAGAGGCTGCAGATGATCCTAAGAAATTTCAAAGAAGGTTGGCAAACCGAGCCGCAGCTGCACGTTTTAAGGAGAAGCAGACGATGCACATTCTTGACTTGGAACGCAGAGTAAAGATTCTTGAGAAGACTAATGCTTCACTGGTTGGAACGATGACGCTTATGGAGAAGGAAAACATGATGATGATGGGCGAGAACAAGGAAGGGAAGCTTCGAGTTCAATTGCTGGAGCAAAAGGCACATCTTCTTGATGAAATCGAAAGACTAGAGAAGGAGGCAAAGGAACGAGAGGGCGTAGACTACTCTCAACTGAAGCTAAGTGAAGAGCTCATCGCTGAAGTCAACCGACTTAAGGTGGCAGCTGGTGAGGGAATGACAAACCCCAGCCAGTTCGACAGTCCAATGATGCAGCCGTTGGATCCAAACATGTTCCAGCTGCAACTCAACATCAATGAGTTTAATCAGCGGCCATTGGATACAAACATGTTCCAGCAGCAAGTTAACATCAATGAGGTCAATGAGTTCAATCAACAACAGCCAAAGCAAGATTTTTCTGGACATTAG
Protein Sequence:
- >900536|Arabidopsis_lyrata|bZIP|900536
MNGRGNRTPSSTQYQQNPFSTNGGQSTGMSLSHQTSPSTLSQVPPLIRFPAGSPDFSPGPRCTTQPFPTYSDFTQTSPSFHFHNPFAPGSSTLSSSFSNYPLTSPSPSEFHNPLAPTSFTPFPTSSDFTQTSPSSSTFHNSQGPTISTPSSSFYFPQTSPSPSPVSSSTPFSHDSFMHSNPEPWTIPQPSHVFSSTSSGSSTPPSFRRDSFPRSYPGKGSMTHRPILSVLPPSPVYCSNPMVSSSPTSIGRKSIPLMHPSPSVHVANRDSSIRSNQNLHPLPPRVPVKRSNSAKVSRSNTLHSRKSHKRTNSMAPQSSPGSSYLELSDMLVGDSSCGEEGFGELIYDEEAMKEFCSEYMILHNNNNGDQNQNVDVLMITNTADSGGPGNANESKFKTGSTTSGVKRRAGKEIEPSRQLYRSASADTCYSDSIKRRNLQGQVSSSVGRGDKEAADDPKKFQRRLANRAAAARFKEKQTMHILDLERRVKILEKTNASLVGTMTLMEKENMMMMGENKEGKLRVQLLEQKAHLLDEIERLEKEAKEREGVDYSQLKLSEELIAEVNRLKVAAGEGMTNPSQFDSPMMQPLDPNMFQLQLNINEFNQRPLDTNMFQQQVNINEVNEFNQQQPKQDFSGH*