Information report for XP_009798050.1
Gene Details
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Functional Annotation
- Refseq: XP_009798050.1 — PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2
- TrEMBL: A0A1U7YGV5 — A0A1U7YGV5_NICSY; putative B3 domain-containing protein Os03g0621600 isoform X2
- STRING: XP_009798049.1 — (Nicotiana sylvestris)
- GO:0009909 — Biological Process — regulation of flower development
- GO:0010048 — Biological Process — vernalization response
- GO:0005654 — Cellular Component — nucleoplasm
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Nicotiana benthamiana: Niben101Scf03502g01001.1
- Nicotiana tabacum: XP_016453357.1, XP_016490744.1, XP_016490738.1, XP_016490759.1, XP_016490750.1, XP_016490765.1, XP_016454455.1, XP_016454454.1, XP_016454453.1, XP_016473178.1, XP_016488301.1, XP_016488300.1, XP_016492492.1, XP_016454456.1
- Petunia inflata: Peinf101Scf00925g17001.1
Sequences
CDS Sequence:
- >XP_009798050.1|Nicotiana_sylvestris|B3|XP_009798050.1
ATGGCAGCTAAGCCCCAATTGCAAAGTGGTGAAGGCTCTTCCATTTGGAAATCTTCTACTGCTAAAATTCCTCAACCAAAGTTCTTCAAGATTATACTTTCCCAACATGAATGCAGCAGTCTAAGGATTCCGGAAGACTTTGCGAGAAGATATTGCAAGAACATGCTAAACCCTGTGTATCTTGAGGTTCCCACTGGAGAAGTATGGGAGGTTGAAGTGGTTCTTTCTCAAGGCCAAATTTGTCTAGGCATTGGATGGCAAGATTTCAGCGACTTCTATTCAATAAGCTGCGGCCACTTTTTGATGTTTGGATACAATGCTCGTTCCCATTTTAATGTCACTATATTTGATTTGAGTGCATCAGAAATTGAATATCCATACAGTTCTGCCCATGGTATACACACTCCCATTTCTTATTCCCATGAAACACATCATGCACCAGAAAGAGACCAGTCCGAGTCAGATGATTCTGTAGAGATCCTCGAGGGTATTCCCAGAAGCCAGAAACCGAACGCGATAATTCCTGATATGGTTGAAAATTCTGTTGAGAACCTAGACCATTGTCCATTAGTACAGTCCAGCAAAAGACAAAGACAAGAAGGAGATGCAGAGGATGATGTTTCTGTTGACATGCATATAAAAAAAATGAAGGTTGAGAAGTTGCGAGAGGATGTAGCTTCACCTTCTTTCATAAGAAAAGGCCAAAAAAGAAATAAAGGCTGCAGGACGCACAAGCAACAATCCGAGAGTGTTTATGGTCAACACAAGTCAGTAATGGACAAAGAGAGGGCTGTAGCATATCAAAGAGCAAAAGCTTTTAAGTCCAAAAATCCATTTATTATATCTTTTATGCAACCATCTTATGTCTTCTCTCCATTCAGTCTGTCCGTAGCGCTGAAATTTGCCAGGAAGTATTTCCTTGAGAACTATGGCAATTTAGTGCTCCGTGTTCCGGGCAAAGGCAGGGGATCTTGGTCTGTCAAATGCACTACCAGAGGCACAAATGCTACAGTTTATTCTGGTTGGAAGGCATTTGTGCTGGACAATAAGTTAAAATGTGGTGACGCTTGTGTATTTGAAGTGATTAAGGGCACTCGGCTTTTTATAGATGTCACAATATTTCGTGCAGCTTGGAGCACACTAATGCACAAGATAGTTGGAGAAGTGCCAGGGGGTTCTGATAGTAAAAGCAATGTTATCAAAACTGATAATTGTGTTCCATGTTCACAACTCAAAGTAGTTCACACCAAGAAATTAAAGCAGCGGACAGAAGAACATGGTGAAGGCACTGAGATTGAGCATTCTGTTGAGATTTTGGGCCATTGTCCGTTAGTACATGGAAGCAAAAGAAATAGACCAGAAGGGGAGGCAGAGGGTGATGTTTCAATTGACCTTCACACCAAAAGTATCAATGTGGAAAACACACAAAAGCATGTCACTTCACCTTCTATCACAAGAAAAACCAAAAGAAGCGGAGAAAGTTGCAGGATGCACAAGCAACAATCCAAGCTGGTTTATGCTATGAACAAGACAGTATTGGACAAAGAGATGTCTATAGCATATCAAAGAGCAAAAGCTTTTAAATCTGAGAATCCATTTGTTATATATTTTATGCAACCATCATACGTCTCGAAACCATACAGTCTGCAAATATCACTCTTATTTGCTGTGAAATATTTCCGAGAGAAATGTGGCAATTTAGTGCTTCGTGTTCCTGGAAGAGGATCTTGGCCTGTCAAATACGCTCTGGGAAAATCAAAATCAAAAATTTGTTTCTCTTGGAAGGCATTCGTACTGGATAATAAGTTAAATTTTGGAGACGTTTGTGTATTTGAATTGATTAAGGGCGGCACTAAGCCCATTCTAGATGTCACTATATTTCGTGCCGCTAAGAGCAAACCAATGCATAAAATAGATGCAAAATTGGCAAGGGTTTCTGATCATAAAAACAAGACTATCAAAACTGAGAAATCAGTTCCGTGTTCTCAACACAAAATATTTCACAGCAAGAAACTGAATCTTGAAAAGAAGCAGAAAGGAGATTCAGATGGATTCACTTCAAAAATTAAAGAAGAATTCAGTGAAGACACTGGGAAGCATGTGCAACAATCTAAGTCTTCTTGTAAGGGCAGTGCGGTGGCCAAAGAGATGGTCTTAGCATATCAAAGAGCAAAAGCTTTTACATCTGAAAATCCGTTCTTCATATGTCTGATGCAACCATCATATGTGTCTTCTGCCAGCGGCCCGGTGCAATTGTCCATAACACTGGAGAGAGCTAGGAAATTTTTTTCCACTAGACATAGTGATGTGGTACTTCGAGTTTCAAGCAAGAAATCCTGGGCTGTAAAATGCATTCTTGGAACAGTTAATGCTAAGTTGTCCTCCGGTTGGAAGGAGTTTGTGCTTGACAATAACCTAAAAGTAGGTGATGTTTGTGTCTTCGAAAGGGTTATAAGTAGACCCAAACTTTTGTTCAATGTCATTATATTTACTTCTGCTGAAGGTAGGTAA
Protein Sequence:
- >XP_009798050.1|Nicotiana_sylvestris|B3|XP_009798050.1
MAAKPQLQSGEGSSIWKSSTAKIPQPKFFKIILSQHECSSLRIPEDFARRYCKNMLNPVYLEVPTGEVWEVEVVLSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHFNVTIFDLSASEIEYPYSSAHGIHTPISYSHETHHAPERDQSESDDSVEILEGIPRSQKPNAIIPDMVENSVENLDHCPLVQSSKRQRQEGDAEDDVSVDMHIKKMKVEKLREDVASPSFIRKGQKRNKGCRTHKQQSESVYGQHKSVMDKERAVAYQRAKAFKSKNPFIISFMQPSYVFSPFSLSVALKFARKYFLENYGNLVLRVPGKGRGSWSVKCTTRGTNATVYSGWKAFVLDNKLKCGDACVFEVIKGTRLFIDVTIFRAAWSTLMHKIVGEVPGGSDSKSNVIKTDNCVPCSQLKVVHTKKLKQRTEEHGEGTEIEHSVEILGHCPLVHGSKRNRPEGEAEGDVSIDLHTKSINVENTQKHVTSPSITRKTKRSGESCRMHKQQSKLVYAMNKTVLDKEMSIAYQRAKAFKSENPFVIYFMQPSYVSKPYSLQISLLFAVKYFREKCGNLVLRVPGRGSWPVKYALGKSKSKICFSWKAFVLDNKLNFGDVCVFELIKGGTKPILDVTIFRAAKSKPMHKIDAKLARVSDHKNKTIKTEKSVPCSQHKIFHSKKLNLEKKQKGDSDGFTSKIKEEFSEDTGKHVQQSKSSCKGSAVAKEMVLAYQRAKAFTSENPFFICLMQPSYVSSASGPVQLSITLERARKFFSTRHSDVVLRVSSKKSWAVKCILGTVNAKLSSGWKEFVLDNNLKVGDVCVFERVISRPKLLFNVIIFTSAEGR