Information report for XP_009794884.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_009794884.1 — PREDICTED: B3 domain-containing protein Os07g0563300 isoform X3
- Swissprot: Q0D5G4 — Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
- TrEMBL: A0A1U7Y6L4 — A0A1U7Y6L4_NICSY; B3 domain-containing protein Os07g0563300 isoform X3
- STRING: XP_009794882.1 — (Nicotiana sylvestris)
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA02g16520
- Citrus sinensis: orange1.1g002739m
- Gossypium hirsutum: Gh_A05G1407, Gh_D05G1572
- Nicotiana benthamiana: Niben101Scf06222g02001.1
- Nicotiana tabacum: XP_016514251.1, XP_016514249.1, XP_016514250.1, XP_016445999.1, XP_016445998.1, XP_016445997.1
- Petunia inflata: Peinf101Scf00287g17023.1
- Solanum lycopersicum: Solyc02g079020.2.1
Sequences
CDS Sequence:
- >XP_009794884.1|Nicotiana_sylvestris|B3|XP_009794884.1
ATGTCGTCGTCCGCTGCGCCGTCGTCGGCTACGAAGGTTTGCTTCAACACCAACTGCAACCAATTTATTGAACGGCCGAAGAAAGGTTGGCGCCGTCGCACCGGCGAGTTAGCTGACCTTTGTGATCGTTGCGCTTCTGCTTATGATGATGGCAAGTTTTGTGAGACTTTTCACCTCAAAACTTCTGGATGGAGATCTTGTGAGTCTTGTGGAAAGCAAATTCATTGTGGATGCATTGTCTCTTTCCATACATTCGTTCTGTTGGATGCTGGAGGTATTGAGTGCTTATCCTGTGCAAGGAAAAGTTTTATTTTGCCTGAAAGAATTAAAGACGTCAATAATTGGAATCCAATAGCTGGTTCTGGTCCTGTTCCATGGCGACAAGCACCAAGTTTATTTAATGGTTCCGCCATTCAAAATGAGTTGCAGCCCAGGACACCCTTTCTTGATGCCACAGGCAGCATCGACAGACTTTGTCTTGGTGAGAGACCGTCTGCCTTGTCCTCCGACAACAGCAGGAAGGACTCTTGTGAAAAGTTGATGAATGGAAAGCTGAAGATTGGTGTACCAGGAACACTTGAAAATGGATATGCTGGTCTTAATCATGAGGAGCCCCCTAAGTCTTGTATAAGTGGTCCACCACAATTATCTTATGCAAAGAATGATCTTTCTGCTCCCAGTTTTTCTTTGACTATCGGTTCTTCTTGCAAAAATGAACCAACTGATCACAGTAAGGTGTCTATTAGTCTCCAACAACAAACCACACTTTCGACTCCATTGGGGAAGCAGCTTGGTGGTCATGCTACAGTGGATTACGCTGGAGAGACTCAAGTCCGCAATTCGAAAACCCGTGTAGATGGGAGAGGAAAGCATCATTTACTTCCTCGTTACTGGCCTCGCATAACGGATGAAGAACTACAACAAATATCTGGAGACTCAAATTCTGTAATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGACGCTGGCAGGATAGGACGGTTAGTATTGCCGAAGAAATGTGCTGAGGCCTATTTTCCACCAATTTCTAATCCAGAAGGGCTGCCTCTCAAGGTGCAAGATCTGAAAGGGAAGGAATGGATGTTTCAGTTCAGATTTTGGCCTAATAATAACAGTCGTATGTATGTCTTGGAAGGGGTGACTCCTTGTATACAGTCGATGCAATTGCAAGCAGGTGACATAGTAACATTCAGTAGGATAGAGCCAGAAGGAAAGTTGGTCATGGGGTGCAGAAAGGCCTCAACTACTCTTACAGCAGATCAGGGAAGTGAAGCTTGCAGTAACAGTAACGGTGTTGTTACAAATGGGAATGTCAATACTCAAAGTACCAAGTTCTCTGAAGAAGTTCTGGCAAATTCTACTAAAAAAGGCTTTTCATCAACCACTCATGTTGCTCCAGCAGATTCAACAATTGGCTGGGCTGAAACTAAATTGTCCGATGATATGGCTATGGAATTTTTAGGAAACAATCGTTCTATTCGTTGTAAGAGGAAGAGTAGCACCCTGGGTTCAAAAAGCAAACGCTTGAGGATTGACAATGAGGACTTAGTAGAGCTGAAGGTCACAGTGGTGCAAGCCCAAGGGTTGATGCGTCCACCTTCAAGTGATGCTCCTACAGTAATCGTGATAGAAGGCTGTGAGTTTGAAGAATACGAGCAGGATGCACCAATTATTGGCAGGCCTGCAATCCCTTCTGTGGATCATTTGGGTGAAAAAATACAATGGGTACAATGTGAGGACTGTTTCAAGTGGCGAAAAGTTCCTGACAGTGCTCTCCTTCCATCAAGATGGACTTGTTCAGAAAACTCATGGGACTCCGAGAGGTCTGTGTGCTCGGCAGATCAAGAATTAACTGCAGATCATCTGCGAGACCTCCTGCCTCGTATTAATAAAGCTGCCAAGAAAATGAAGGCTTCTAAACAGGAAACAGACGTTGAGGCTCTGGATGGGCTTGATGCACTTGCTAATCTCGCTATTCTAGACGAGGGAGAGACTCTTCCAGCATCATCACAGGCCACGACGAAGCACCCACGTCATAGACCTGGGTGTACCTGCATTGTCTGCATTCAGCCCCCAAGTGGAAAAGGTCCTAAGCACAAGCAATCATGTGATTGTATCGTCTGTAAATCAGTAAAGCGTCGTTTCAAAACATTGATGCTGAAGCGTGAAAAAAAGTTATCAGAGAAAGAAGCAGAAGCTGCTTGTCAAAAACTGCAGCCACAATTGGCTGGACAACTGCTTGATGCTGGTGACATTCAAGAATCTAATGATGACGCAGGGCATTTTAGCCCACAGCGGGGAGAGCTGAACAATGAGGGTTATGCGGATGATCCCAATTACCCTAATGAGAAGAAATCTTCTGCTTTGCCATTTAAAGGTGAAATTGACCTGAATGCTAAACCAGAGAGAGATGATGAGCTTTCACCAGGCTCTGATTCTGGCAGCATAATGCGCATACTCCAAGTTGCTGCAGAGCAATATGTCAGGCATTGTGAGAATGGAAGTTTCACGGGTAATCATGAAAATGGAGATGGTACTGGAGAGACAAATCCGAATAATTGTGTTATTGTTGGTGGTACTAATCAAACTGATGTAGACCATAATAGGCCTTTATCTATAGGCACGGCTGCATCTTTGGCACCTAATGACCAGTAG
Protein Sequence:
- >XP_009794884.1|Nicotiana_sylvestris|B3|XP_009794884.1
MSSSAAPSSATKVCFNTNCNQFIERPKKGWRRRTGELADLCDRCASAYDDGKFCETFHLKTSGWRSCESCGKQIHCGCIVSFHTFVLLDAGGIECLSCARKSFILPERIKDVNNWNPIAGSGPVPWRQAPSLFNGSAIQNELQPRTPFLDATGSIDRLCLGERPSALSSDNSRKDSCEKLMNGKLKIGVPGTLENGYAGLNHEEPPKSCISGPPQLSYAKNDLSAPSFSLTIGSSCKNEPTDHSKVSISLQQQTTLSTPLGKQLGGHATVDYAGETQVRNSKTRVDGRGKHHLLPRYWPRITDEELQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISNPEGLPLKVQDLKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDIVTFSRIEPEGKLVMGCRKASTTLTADQGSEACSNSNGVVTNGNVNTQSTKFSEEVLANSTKKGFSSTTHVAPADSTIGWAETKLSDDMAMEFLGNNRSIRCKRKSSTLGSKSKRLRIDNEDLVELKVTVVQAQGLMRPPSSDAPTVIVIEGCEFEEYEQDAPIIGRPAIPSVDHLGEKIQWVQCEDCFKWRKVPDSALLPSRWTCSENSWDSERSVCSADQELTADHLRDLLPRINKAAKKMKASKQETDVEALDGLDALANLAILDEGETLPASSQATTKHPRHRPGCTCIVCIQPPSGKGPKHKQSCDCIVCKSVKRRFKTLMLKREKKLSEKEAEAACQKLQPQLAGQLLDAGDIQESNDDAGHFSPQRGELNNEGYADDPNYPNEKKSSALPFKGEIDLNAKPERDDELSPGSDSGSIMRILQVAAEQYVRHCENGSFTGNHENGDGTGETNPNNCVIVGGTNQTDVDHNRPLSIGTAASLAPNDQ