Information report for WALNUT_00011203-RA
Gene Details
|
|
Functional Annotation
- Refseq: XP_018830212.1 — PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
- TrEMBL: A0A2I4FEY6 — A0A2I4FEY6_JUGRE; B3 domain-containing transcription factor VRN1-like isoform X2
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_27838
- Daucus carota: DCAR_003837
- Fragaria vesca: mrna29444.1-v1.0-hybrid, mrna14412.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_34095_BGI-A2_v1.0, Cotton_A_01668_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D03G1685, Gh_A02G1527, Gh_A12G0629, Gh_D12G0646
- Malus domestica: MDP0000316701
- Manihot esculenta: Manes.07G115200.1.p
- Populus trichocarpa: Potri.004G230100.3, Potri.004G230100.1
Sequences
CDS Sequence:
- >WALNUT_00011203-RA|Juglans_regia|B3|WALNUT_00011203-RA
ATGCCTGGTGGTTGGTCTACGTTTGTAAGGGAAAATAAACTACAAGTTGGAGATATTTATGTATTTGAGCTGATTAAGAGTGACGATGATATACTGAAAGTATCCATTAAGAGTAATATATATTACAAAGAAGTGAATATGGATCCTATATGGTATGCCATAAAATCAAGGTTTCCGAAGAAGTTTGTAAGGAAATATGGAGAAGGCTTGTCAAACTTAGCACTTCTTAAGCTTCCAAATGGTGCAGAATGGAAAGTAGAGTTAACACAATGTGATGGTGGGGTTTGGTTTCAGAAGGGTTGGCAAGAATTCTTGGAGTATTATTCTATAAAGTTGGGGCACTTGTTAGTCTTTAAATATGAAGGACATTCTCACTTTCGTGTACTTGTATTTGATGAGAGTGCAACAGAAATCGAGTATCCTTTCAATAGCTCCCTTGGAGAGGACAAGCTTGATGCAGAAATCTTGGCTTCTCCAAGGGAAGAAACCCGGGCTGATGGTTCTGTTGAAATATTGGATGACTTTCCAAAAGACACAAAAACTAGGGAGAAATCATGGTTACCATGTCCTCGAGCTCAGAAGATGATGAGAACCAATCCTAGCGAAAAAACCACGAGTACGTCGAATATGCCAAGATTGGCTCAACAAAATTTGCATTCTACCAAGCAGGAGCTTGAAGGTGCTGAAGGAATTTTTATAACAGAGCAATGCCCAAAATATAATGTCCCAAGGACTCAAACAGTGAGTGTTGATGAAAAAACAAGAGCTCTTGAAAAAGCAAGTGGCTTTAAACCTGAAAATCCTTATTTCATGGCTGTCATGCAGCCATCGTATGTGGGTTCTAGAAACTACCTGAATCTACCTATAAGCTTTGCAAAGAGTTATTTGAATAAGAAGGTAGATGATATCATCCTTCGGGTTTCAGATGGGAGATACTGGTCTGTCAAGTACATTTTCCAAATGAGTGCTACAATGTCGAGAGGCGTGTTTGGATGTGGTTGGAGAGTGTTTGCACGAGACAATAATCTGGAAGTAGGTGACGTTTGTGTTTTCGAACTGATTAAGGGCATCGAAACTTCTTTCCAAGTTGTGATTTTCCATGCCACTCAAGAACGTTGCCCTCAATCTCCAGGGGAGCTTAAGTTTTCTGCTAAAGGAGAGACTAGAGACATGCCTAATTCTCTAATGCGCCGTCAATCTCACATTTTCAAGAAGCAACGATGGACTGCTGGGAACAAAGCTAGAGCTCTTGAGAGAGCTAGCTCTTTCAAGTCTGAAAATCCATTTCTCACGGTTGCCATGTTCCCGTCGCACGTTTGTAATAATAGCAACTTGGTAAGCTTTGAATTCCAGGCTGTGCCAGGTAGCTTTCTCAAGAGCAGATATATGAAAGAAAGGAGACAGATAGTGATGCTTCAGGTCGGGGATGAATCATGGCCAGTGACTGTTTTGAGTACTAGTTCTCGGGTCACCATGTCTGGTGGTTGGTCTACTTTTGCAAGGGACAATAAACTGCAAGCAGGAGATGTTTGTGTGTTTGAGCTGATTAAGAGTGACGATGATATACTGAAAATGATTCCAAGAAGATTTATAAGGAAATATGGAGAAGGCCTGTCAAATGTAGCTTTTCTTAAGCTTCCAAATGGTGCAGAGTGGAAACTTGAATTGACAAAATGCGATGGAAGGGTTTGGTTACAGAAGGGTTGGCAAGAATTCATGGAGTATTATTCTCTTAAGCTGGGGCACTTGCTGGTTTTTCGATATGAAGGAAACTCTCACTTTTATATACTTGTATTTGATGAGAGTGCAACAGAGATAGATTATCCTTCAAGCAGCTCCCTTGGTGAGGGGGAAAATCTTGATGGAGAATTGTTAGTTTCTCGGATGGAACAAACTGATAGTGATAGTCATGCTCAAATATTGGATGACTTTCCAACACTCACAAAAACAAGGAAGAAATCACAATTACCAAGTCCTCAGCCTCGCAAGATGATGAGAACCAATCGAAGTGCTAAACCTGCGAGTACTTCCAATCTGTCAAGGTCGGTTCCTCCCCATCGATCTAAAGATGCAAAGAGTTTTGAATACTCTCTTATGATCATTTGCTTGTCAGCAAAAGGTTCTAAACCGGTGCCTACTACCAAGCGATGCCCAAAATCGAAGACTCTTAGAATGACTCGAATGTTGAATGTGAATGAGAAGGCTAGAGCTCTTCAGAGGGCAAGTGGCTTTAGACCTGAAAGTCCTTATTTTAAGGTTGTCCTGCAGCCATCATATCTGTGTCGTGGATGTAAGATGTCTGTACTGGGTAGGTTTCTCGACATCAAACAAAATGTGCAGATGGTGATGCTTCTGGTTGGGGATAAATCCTGGCCGGTGAAGTTTCGCAGTTATCCACATTCATCATCTGTTGCCTTTACTAGTGGTTGGTCTACCTTTGTTAAGGATAATAGTCTGCAAGTAGGAGATGTTTGTGCCTTTGAGCTGATTAAGAGTGATGATGCTATGCTGAAAGTCTCCATTTTCAGAAACCTTAGTTAA
Protein Sequence:
- >WALNUT_00011203-RA|Juglans_regia|B3|WALNUT_00011203-RA
MPGGWSTFVRENKLQVGDIYVFELIKSDDDILKVSIKSNIYYKEVNMDPIWYAIKSRFPKKFVRKYGEGLSNLALLKLPNGAEWKVELTQCDGGVWFQKGWQEFLEYYSIKLGHLLVFKYEGHSHFRVLVFDESATEIEYPFNSSLGEDKLDAEILASPREETRADGSVEILDDFPKDTKTREKSWLPCPRAQKMMRTNPSEKTTSTSNMPRLAQQNLHSTKQELEGAEGIFITEQCPKYNVPRTQTVSVDEKTRALEKASGFKPENPYFMAVMQPSYVGSRNYLNLPISFAKSYLNKKVDDIILRVSDGRYWSVKYIFQMSATMSRGVFGCGWRVFARDNNLEVGDVCVFELIKGIETSFQVVIFHATQERCPQSPGELKFSAKGETRDMPNSLMRRQSHIFKKQRWTAGNKARALERASSFKSENPFLTVAMFPSHVCNNSNLVSFEFQAVPGSFLKSRYMKERRQIVMLQVGDESWPVTVLSTSSRVTMSGGWSTFARDNKLQAGDVCVFELIKSDDDILKMIPRRFIRKYGEGLSNVAFLKLPNGAEWKLELTKCDGRVWLQKGWQEFMEYYSLKLGHLLVFRYEGNSHFYILVFDESATEIDYPSSSSLGEGENLDGELLVSRMEQTDSDSHAQILDDFPTLTKTRKKSQLPSPQPRKMMRTNRSAKPASTSNLSRSVPPHRSKDAKSFEYSLMIICLSAKGSKPVPTTKRCPKSKTLRMTRMLNVNEKARALQRASGFRPESPYFKVVLQPSYLCRGCKMSVLGRFLDIKQNVQMVMLLVGDKSWPVKFRSYPHSSSVAFTSGWSTFVKDNSLQVGDVCAFELIKSDDAMLKVSIFRNLS