Gene Details:

  • Gene ID: Vang0005s01200.5
  • Gene Name: LR48_Vigan06g129600
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Vigna angularis
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_014521390.1  — AP2/ERF and B3 domain-containing transcription factor RAV1
  • Swissprot:  Q9C6M5  — RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
  • TrEMBL:  A0A1S3VSV9  — A0A1S3VSV9_VIGRR; AP2/ERF and B3 domain-containing transcription factor RAV1
  • STRING:  GLYMA01G22260.1  — (Glycine max)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0048573  — Biological Process — photoperiodism, flowering
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Vang0005s01200.5|Vigna_angularis|B3|Vang0005s01200.5
    ATGCTCAGGAAACACACGTACAATGACGAGCTTGAGCAGAGCAAGCGCAGCCGCGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCGGCCGGGAACGGTAACTCGATCGCTGGCGCGTGTTTTGTAAAGGCGCGTGAGCAGCTGTTCGAGAAGGCGGTTACCCCGAGCGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAACACGCGGAGAAGCACTTCCCGTTGCATAGCGCTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGCGGGGAAAGTGTGGCGATTCCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGCTTTCACCGGTCCACCGGACCGGACAAGCAGCTCTACATCGATTGGAAGGCGCGGATGGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCGAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA
Protein Sequence:
  • >Vang0005s01200.5|Vigna_angularis|B3|Vang0005s01200.5
    MLRKHTYNDELEQSKRSRGVVRRRGGAAAAGNGNSIAGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLHSANGVSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARMGPVVEPIQMVRLFGVNILKLPGSEPNGNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL*