Information report for TRIUR3_26890-P1
Gene Details
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Functional Annotation
- Refseq: XP_020180042.1 — B3 domain-containing protein Os01g0234100-like isoform X3
- TrEMBL: T1N8U0 — T1N8U0_TRIUA; Uncharacterized protein
- STRING: TRIUR3_26890-P1 — (Triticum urartu)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi5g01445.2.p, Bradi5g01445.3.p, Bradi5g01445.5.p, Bradi5g01445.4.p, Bradi2g07980.2.p, Bradi2g07980.1.p
- Hordeum vulgare: MLOC_20970.2, MLOC_20970.1, MLOC_20970.3
- Panicum virgatum: Pavir.5NG005800.1.p, Pavir.5NG005800.2.p
- Setaria italica: Seita.5G005600.1.p
- Setaria viridis: Sevir.5G005700.1.p, Sevir.5G005700.2.p
- Triticum aestivum: Traes_1DS_EFCC1617E.2, Traes_2BS_E29F278C4.1, Traes_2AS_FC3F1F39A.1, Traes_2DS_6584E8617.2
Sequences
CDS Sequence:
- >TRIUR3_26890-P1|Triticum_urartu|B3|TRIUR3_26890-P1
ATGAAGACGTACGACTACATCAACCGCGTTGATATAACGCTTCCGCGAACGGTCTACGAGGGTATTTACCAGTGTGCGTATAATCCCTTCTTCCTCCTCCTCTGGCTCACACTCACACTCACTCCACCCATCGGAGCTCCCGAAAGCAAGAGAGGGACGCCAGCGGGTGTTCCCCACTCTGCCAAGTCCAAGACGGGGCAGAAGATGGTCCATCGAAGGCGCCCTTTGCTTGATGAAGGCAGCAGCAGCCGAAACGAAGACGGCGGCGGCGACGATTTTGAGCCTACGGCTATGGGAGGGACGCCAGCGGGTGATTCCCCCCATTCTGCCAGGACCAAGATGGGACAGAAGATGTCATTGGCGCATCGAAGGCTCTCTTTGCTTGACGATGGCAGTAGAATCAGTAGACACATTGCTGCTGCTGCTGCTGCGGCTGATGATGATGGTGGTGGTTCTGAGCAGATGGGTGAGGAGTTCACTGTTGATGTTGCTCAGAAGAATACGGCAGTTGATGACAGCGATGATCCAGATGGTAGCGGGGATGACTTTGTTCCATTGATAATGATGAGAACCAAGAATGTGAAGAGTGAGCCTGGAAAGCATCCCGGCTTCCGATATAAACACAAAGCCCAGAGAACTATCAATAAAACTTATAAAAGGAAGAAGACAGGGAGGTCAGCAGGTCCAGTATATGCCAAGAGAAAGATAGAGAAGAAGCCAAGATTGGTTGGCAGCAACAACATTAGTAAGATATCTGATGATGATGGCCAGAAGAAATATGCAAGAGCTTTGGAGGTAGAAAAGAAATTGCCAGCAGAAGGTCCGAGCTTCGTCAAGCTTATGCAGATATCACATGTTGTAAGGGTTTTTTGGCTGGGTGTCCCGGTTAGCTTTTGCAGAGAGCATCTTCCAAACCATGATGTTACAATTGTATTAGAAGATGAGGATGGCCTCCGGTTTGATACAAATTATCTAGCGCGCAAGCAGGGCCTCAGTGGTGGGTGGAGTAGATTTGCAACACGACATCATCTTAAGGTCGGCGATGCCGTGGTCTTTCAACTCGTGGAACAAACAAGATTCAAGGTGTATATACTGAGAGAGAGTAAGTTCACTACAACCGATGGAGCACTCAGTCTCCTGAGTTTAGACACGTCCATGGAAAACAACATGCCCGAAAAAGGAGGAGAAGATACTTCTGATGAAGATGTCAAGTCCAAGGAGGATCCAGAAGTCACCAAAGTCATCACCAACAAAGCATCCGATGATGATAGCAACGACCCTTTTAGTGAAGCAGCAGCAAACGGAGGCATCAGATCCCCAGATCCAGACCCTGATTTCGACGCCGTGAAAACATTCAGAGCCTTCAAGATGGTCATCGACAGTTCTGTCATCGACCGCAAACTAGTCCCTGATCGCCTGCTTTGGACGTACTACAAGCTCTGCGGCGACCGGAAGGCGTTCCTCCACAGGCGTCTGCCGAAGCACATAAACCTGACGCTAGCAGCAGGGGTGATAGTAGAGACGGCCAGCATCGCTGAGGGCATCAGGTCCTATCCCTCCTCCTGCTCTTCCTGCGAGGACCTCGCGGCGTGGAAGAAGACCCTAGAGTCCTTCGAGCTGCTGGGAATGGACGTGGGCTTCATACGCAAGCGCCTCGATGAGCTCCTTTTCCTCCTTGACGCCCGGTCATCGGATGATCATCTGCCGGAGGGGTACGAGGAGGTGAAGCTGGAGCGTGCTCGTGCAGCAGAGAAGGTGAAGGCCCTCGAGTCGAAGATGGCGAGCCTGAAGGATGCTCTCAAGGATATGGACATGGAGATGGAGGAGATCGCGGAGAAGAGGAGGGGCCATGCTATGCTGCAGCTGGCGGCCGCGCCATGGTGA
Protein Sequence:
- >TRIUR3_26890-P1|Triticum_urartu|B3|TRIUR3_26890-P1
MKTYDYINRVDITLPRTVYEGIYQCAYNPFFLLLWLTLTLTPPIGAPESKRGTPAGVPHSAKSKTGQKMVHRRRPLLDEGSSSRNEDGGGDDFEPTAMGGTPAGDSPHSARTKMGQKMSLAHRRLSLLDDGSRISRHIAAAAAAADDDGGGSEQMGEEFTVDVAQKNTAVDDSDDPDGSGDDFVPLIMMRTKNVKSEPGKHPGFRYKHKAQRTINKTYKRKKTGRSAGPVYAKRKIEKKPRLVGSNNISKISDDDGQKKYARALEVEKKLPAEGPSFVKLMQISHVVRVFWLGVPVSFCREHLPNHDVTIVLEDEDGLRFDTNYLARKQGLSGGWSRFATRHHLKVGDAVVFQLVEQTRFKVYILRESKFTTTDGALSLLSLDTSMENNMPEKGGEDTSDEDVKSKEDPEVTKVITNKASDDDSNDPFSEAAANGGIRSPDPDPDFDAVKTFRAFKMVIDSSVIDRKLVPDRLLWTYYKLCGDRKAFLHRRLPKHINLTLAAGVIVETASIAEGIRSYPSSCSSCEDLAAWKKTLESFELLGMDVGFIRKRLDELLFLLDARSSDDHLPEGYEEVKLERARAAEKVKALESKMASLKDALKDMDMEMEEIAEKRRGHAMLQLAAAPW