Information report for TRIUR3_22120-P1
Gene Details
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Functional Annotation
- Refseq: XP_020168823.1 — B3 domain-containing protein LOC_Os12g40080-like
- TrEMBL: T1MVV5 — T1MVV5_TRIUA; Uncharacterized protein
- STRING: TRIUR3_22120-P1 — (Triticum urartu)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0016021 — Cellular Component — integral component of membrane
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi4g03000.8.p, Bradi4g03000.7.p, Bradi4g03000.6.p, Bradi4g03000.5.p, Bradi4g03000.4.p, Bradi4g03000.3.p, Bradi4g03000.2.p, Bradi4g03000.9.p, Bradi4g03000.10.p
- Hordeum vulgare: MLOC_74632.1, MLOC_54060.4, MLOC_54060.3, MLOC_54060.1, MLOC_54060.7, MLOC_54060.5, MLOC_54060.2, MLOC_74632.2, MLOC_54060.6
- Triticum aestivum: Traes_5DS_485F1D5FD.1, Traes_5BS_BE6397B54.2, Traes_5BS_580CC3E5F.2, Traes_5DS_F59D340A9.2, Traes_5DS_7E44031E8.1
Sequences
CDS Sequence:
- >TRIUR3_22120-P1|Triticum_urartu|B3|TRIUR3_22120-P1
ATGGGGTCGCAGAAGAATCCCGCGTCCCTGGGTGCCAATAGTCGCACTGGACAACGACGGAGTCGACGCCGGCAACGAGCTACAGAGGCGGCGACGGCGTGGGCGCACACGGCGAGGCGGAAAGCTACGCGAGCAGTTGGAGCTGTGGAACCGGCCTACGCGACGCGGCAACGGGGAAAAACACGCGCAGAGGCGCTACAGAGGTCGCAGGACTCGCCGGAGCAGGGTTCGACGGCAACGGGTTCGGCAGACGGCGCCGGGCTAGCTAACGCATGCAAAAGAGGAAGAGAAGGGCACGAGGCTGCTCAGGGGCTTACCATGAGCACGAGAGTAGAAAAATATTTCAAGTTTGAATTAGGTTCAAACTTGAAGCATTTTTATCGCAACCAAACCAACTCCAATTTAGGTGAAAACTTGACAGAGAGATATAGAAGAATAGGGTTCAATCCAGATATGATGGCACTGCAAGAACTAGGCCCACTAGTATCAGCTGGTATGGTGTGTATCTGCATATATGTATGCCCTCTTGCTCTGGGCTTGGCCATCGTTGGCATTCTGGCTGCTTCTCTGCCGAAGTATTGGTGGTTCTTGGCAAAGGCTGATGTATCTTGTTCCCTTGACTCCCCAGCATTTTTAGTTATATTTATCATGGCGCTGGATCAAGACCATGAGCAAGGTAACAGGAGTGGTCACAGAATCAGCAGCAAATCCTTTCAAAGATGTGAGGGCTGCGATGCACATTACTATTGGTGTCATATGGATGATACCCAGAAGTATTTCTTCAAGTGCATGGCCATTCCACAGAAGTTTGTGCAGAATTTCAAAGGTCAGATCTCTGAAGTTATCAAGCTAGAAGCTCCTGATGGAAACATATACAATGTTCAGGCTATCAAGGATCTAAACAAGATAGTCCTCGGGTCTGGATGGGGGGTATTTGTCAGATTTTACGAACTAAAAGCGGGCCACTTCCTGGTCTTCAGGTACATCGGGGATTCTCACTTCAAAGTTCTGATATTTGATTTTGCAAGTTGCTGTGAGAAGGAAGTGTTCCATGTTCTCATGAACTGTGGTCCTAATGCCCAAGAAAAAGACACTCGCCTTGATCGATCTCTGCTGGGTGAAAGACGATGCCAGAATGGTGGATCAAGCAACAGTGAGTCCCATCGAAGGTGCGAGCACTGCGATGTGCATTTATATTGGCATCACATGGATGATAGGCAGAAGCATTTCTTGAGGTTCATGGTTGGCGATTTCCTTCACGAAATGAACATACCAGAGAAATTTGTGAACAATTTCAGAGGCAGGATCTCTAAAGTTATGAAGCTAGAAGCTCCTGATGGAAATGTATACAACATTCAGGTTACCAATGATCTGAACAAGATAACCCTTACATCTGGATGGGCAGCATTTGCCAGTGCTTATGAACTAAAAGAGCATGACTTGCTGGTGTTCAGTTACACTGGAAACTCTCACTTTAAAGTCCTAATATTTGACCCAAGTGGTTGTGAGAAAGAATTATTCCGCATTGTCATGAACCACACTCCTAATGTACAAAAAAGGGGTATATCTCATGATCAGATATTCCTGAAGGAAACAAGGCGTCGAGACGGCGGATCTCGTGATAACAACCCTAGGAAAACTAAAAAGGTGACTCCTCTGGACTCTCCTTCACCGAAATCAGCTGAAGGTCTCACATCTCCGGAGAACACCATGAATTCAGGCGGCCCTCCGGAAACCAGCGAGCCTCGGTATGTCCTAGCAACTGGATGCAATCTGACTACAGCGCAGAAGGGTCAAATTGACGCACTTGTGAAGAAAGTTAGGCCTGTAATTCCATTTTACATCACAGCCATGAACAAGACAAGTATTTCTGGATCTCTGGTCATCTGCAAGGATTATGCTGCCAAATACCTTCCACATGAAGACCAATTCATCACACTCTGCCATCCTCGTAAGAGCAACATATGGTTAGACAATTTGAAGGTTACCACTGATGGTTCAGGCATGCTTTCTGCTGGCTGGTCAAGCTTCGCTCTCCACAATGAGTTGCGGGAAAGTGATGTTTGTGTATTCGAAGTATCAAAAAGCGCTGGTGAAATGACAATGGTTGTTCATTCTCTTGAAGGAGGCCATCACCTACAAGGGAAAAACAAGTGCGATTATCCTGTTAAGGGCAAGGCGATTAAGGAAGCTGAGAGTGACCATAAACATGATGAGTCCAAGTCCAACTACTACTACTCAAAGTATGCCAAGGGCCTGAGCGGCGAGGAGCTAGAAGAGATATTCAGGTCAGCGTTGATCCAACGGGGCAATGTGGTATACGTCACCATCCTGGGGAAGAATCAAGTTAGAATCAAGAACAACTTGCTGACCTTCCCCGAGAAGTTTGCAGCTAAGCATCTCGTGGAGAGGTCGCATGACATCCTGCTCCTGAGGCCCAACCGGAGTGAGACGTGGTGTGCGAGGTACTACTACCACCCGGAAAAACAGGGTTTCAACTACAGTTCCTGGACCAAGTTCGTCCGAGACAACAAGCTGCGCAAGGGCCACGTCTGTGTCTTCGAGCTGATGAAGGGCGTGAGTAAGGTGACAATGATTGTCCACGTGTTCACAAAGGTCGATGGCAGAACCGAGAGAGAGGAGTATTTCAGCGCTTGTAGCACCTACTCCTACTCGACTGAAGTTTTCTTCAATTTGCAAAAGTCTGCAATGGCTTACGCTGATGCCTGCGTCTGGGAATCTTCTGATTCCTTTTCTACGCATAAGTTCAATGAACGACATGCATGTTTTTTCCTCCGGTTTTGCAAAACATACCGGGTTTCGCAATTTCAGAAATTTGTCAGTCAAAGAAATTTAATTCTCCTAGCTAGTACCTGGTACTCCATGGAGGTGTCGGACTACCATGCAAATTTAGTCATTCATTCACCAAGCAACCAAGAGTCCAAGACAGTTATTGCCATGTTTTTGAAATCATGA
Protein Sequence:
- >TRIUR3_22120-P1|Triticum_urartu|B3|TRIUR3_22120-P1
MGSQKNPASLGANSRTGQRRSRRRQRATEAATAWAHTARRKATRAVGAVEPAYATRQRGKTRAEALQRSQDSPEQGSTATGSADGAGLANACKRGREGHEAAQGLTMSTRVEKYFKFELGSNLKHFYRNQTNSNLGENLTERYRRIGFNPDMMALQELGPLVSAGMVCICIYVCPLALGLAIVGILAASLPKYWWFLAKADVSCSLDSPAFLVIFIMALDQDHEQGNRSGHRISSKSFQRCEGCDAHYYWCHMDDTQKYFFKCMAIPQKFVQNFKGQISEVIKLEAPDGNIYNVQAIKDLNKIVLGSGWGVFVRFYELKAGHFLVFRYIGDSHFKVLIFDFASCCEKEVFHVLMNCGPNAQEKDTRLDRSLLGERRCQNGGSSNSESHRRCEHCDVHLYWHHMDDRQKHFLRFMVGDFLHEMNIPEKFVNNFRGRISKVMKLEAPDGNVYNIQVTNDLNKITLTSGWAAFASAYELKEHDLLVFSYTGNSHFKVLIFDPSGCEKELFRIVMNHTPNVQKRGISHDQIFLKETRRRDGGSRDNNPRKTKKVTPLDSPSPKSAEGLTSPENTMNSGGPPETSEPRYVLATGCNLTTAQKGQIDALVKKVRPVIPFYITAMNKTSISGSLVICKDYAAKYLPHEDQFITLCHPRKSNIWLDNLKVTTDGSGMLSAGWSSFALHNELRESDVCVFEVSKSAGEMTMVVHSLEGGHHLQGKNKCDYPVKGKAIKEAESDHKHDESKSNYYYSKYAKGLSGEELEEIFRSALIQRGNVVYVTILGKNQVRIKNNLLTFPEKFAAKHLVERSHDILLLRPNRSETWCARYYYHPEKQGFNYSSWTKFVRDNKLRKGHVCVFELMKGVSKVTMIVHVFTKVDGRTEREEYFSACSTYSYSTEVFFNLQKSAMAYADACVWESSDSFSTHKFNERHACFFLRFCKTYRVSQFQKFVSQRNLILLASTWYSMEVSDYHANLVIHSPSNQESKTVIAMFLKS