Information report for TRIUR3_19080-P1
Gene Details
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Functional Annotation
- Refseq: XP_020188333.1 — arginine–tRNA ligase, cytoplasmic-like isoform X1
- Swissprot: O23247 — SYRM_ARATH; Arginine–tRNA ligase, chloroplastic/mitochondrial
- Swissprot: Q9C713 — SYRC_ARATH; Arginine–tRNA ligase, cytoplasmic
- TrEMBL: M7YDV6 — M7YDV6_TRIUA; Arginyl-tRNA synthetase
- STRING: TRIUR3_19080-P1 — (Triticum urartu)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006420 — Biological Process — arginyl-tRNA aminoacylation
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0005634 — Cellular Component — nucleus
- GO:0005739 — Cellular Component — mitochondrion
- GO:0009570 — Cellular Component — chloroplast stroma
- GO:0003677 — Molecular Function — DNA binding
- GO:0004814 — Molecular Function — arginine-tRNA ligase activity
- GO:0005524 — Molecular Function — ATP binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi1g14530.1.p
- Hordeum vulgare: MLOC_68151.1, MLOC_68151.2
- Triticum aestivum: Traes_3AS_E0E90B815.2, TRAES3BF171300020CFD_t1
Sequences
CDS Sequence:
- >TRIUR3_19080-P1|Triticum_urartu|B3|TRIUR3_19080-P1
ATGGGTGGCGAGGCGGCATTCACTTCCTCTTCTACTCCCCATTCACAACCTCAGGAAACTGAAGCTATTCAATGTAGAGTGGAGAGTGTTAAACGACACCTATCCAGATTGGTTGTGAAATCTCTCTGTGCAGTCGCAGCTGATTTTGATGTGGAGCCAATGCTCGAAGTCTCGAAATCAGGATTTAGTGACTACCAGTGCAACAACGCAATGAGCTTATTTCCACGTATAAGAGAATCTGCAACAAACCTCGGGAACCCCAATGCAGTTGGACAGGCAATTGCAGACAACCTTCCTCCTTCCAGAATTGTTGAATCCACCTCTGTTGTTGGACCTGGATATGTTAACATAGTTCTATCCAGTGATTGGATCGCACAGGAGATGCACGTTGGGCATATAAGATCAACCATAATTGGAGATACACTAGCTCGCATATTTGAGTTTGCGAATATTGAAGTTCTTCGTTGTAACCATGTGGGAGACTGGGGTACACAGTTTGGAATGCTGATACAATTTCTGTTTGAGAAATTCCCAAATGGGGAGGAAGCTGCCAACCAGGCCATTGGGGATCTTCAGAGTTTTTACAGAGATGCCAAGAAAAAATTCGACGAGGATCCTGATTTTAAAGGCAGGGCTCAGCAAGCAGTAGTTCGCCTGCAGAGAGGGGAAGATAGATACCTAGCTGCCTGGAAAAGTATTTGTCAAATTAGCCGGAATGAGTTTGACTTGGTGTACAAACGCCTTAATGTGGAACTTGAAGAAAAGGGTGAGAGCTTTTACAATCCTTACATTCCTCGTGTTTTGGAGGAATTGACTGGCAAAGGCTTGATTACAGAAAGTAAAGGCGCTCGAGTTATAGAAGGCCGAAAGCCTCCTCTGATAGTGGTCAAGAGAGATGGAGGCTTCAACTATGCTTCTACAGACTTGGCTGCTCTTTGGTACCGGCTTAATGTGGAGATGGCAGAATGGATAATATATGTAACGGATGTAGGTCAGCAGCAACACTTCCATTCGGTTTTCAGTGCTGCTAGGATGGCTGGCTGGCTCCCAGATCAAAAAGAAGAGAAGTACCCGAAGGCAAGCCATGTTGGTTTTGGCTTTGTTCTTGGTGCAGACGGCTCACGTTTCCGGACCCGTTCCTCTGATGGAGCTGTTCGACTGGTAGATCTACTTGATGAGGCTAAATCCCAGAGCCTGGCACAACTTATCAAACGTCTCACTGAAAATGGTCAAATTGCTAAATGGACGGATGAGGAGCTGGATAAAACTTCAGAGGCTATAGGATATGGTGCTGTTAAGTATGCAGATCTTAAAAACAATCGGCTGACGGACTACAAATTTAGCTACGAACAAATGCTAAGTGACAAGGGAAATACCGCTGTGTACCTTCAGTATGCACACGCCCGTATCTGTTCCATCATCCAGAAATCTAACAAGGATGTCGAAGAGTTGAAAATGACTGAATTTATTACTCTCGGCCATCCTGACGAGCGTTCCTTAGGATTGCATCTCATCCAATTTGCAGAGGTTGTCGAGCAGATCTGTGACGACCTGTCGCCCCATCGCCTTTGTGACTACCTGTACACCCTATCTGAAAGATTCTCACAATTTTACACCAACTGCCAGACTTGCCAGTGCTTCATGATCAGCAGAGAATATCATGACAGATTTCTGCAGATTCCCTGTCAGCCCAAGGCCGCTTGTGTACATATATGTATCGGCGGCCCTGAGTCTTCTTCACTGAATCACCATTTCCTCCTGGAGCTGCTTTGCCAAGTTCACATGGCTGGACTAGCTTCCCAGGTGAAGAGATACTGTGACTGTTACAAGAGATATGCGGGCCATTTGGATGGAAAGATGAGGTGTTTCCGCGGGCGCATGACTGCTAATTTTAGACATGGCATGGGTTCAAGGTCAGCAGTAAATCCTGTTATACCGTACAAGTTCATCGACCATTTCGGAGGAAATATCTCAAGGACCATCGAACTGGAATCCCGTAATGGCAGCATGTACACCATTGAAGTCTCCAAGCTTATGAATGAAACGGTCCTCCGGCAGCATGGATGGGAGGCATTTGTCGATGCGCATGGCGTCGAGGAGAACGACTCGTTGCTGTTTCGCCACATTGAGAAGTCGCGTTTCGAGGTCCTGGTGCTCGACTCCGATGACTGTGAGAAAGTGCTTCCCTCTGCTGGCATCAAAGTTGCTTCTTGTAATGTTCAAGAAAGCTGCAGCATGGATTATATTGATATATCAAGCAGCTCGGGTGATGATACCACAAGGTCGCCAGGGAGCCAACGATTTGCTGCGTGTGAAAGAGGCGACTCGAGCCATCCAAGAAAAACTGCTCTAAAAAACGACTCCTCGTCTGAGGAGGATTCAGGAGAAGACACTGATGCTGCTGAGGAACATTCTGAACATGAATTATCTTTTGAGCTAGATGATATACGTCAGACACCTTGTGCAGGGCGCGCCTATGTCTTGTCTCGGTGTGGTCATCTGTCTGGAGCTCAGGAGGAGAGAGTAACTAGGTTTCTCCAGGATGTTCGAGCTGAGACTCCGGTGTTCGTGGCCATCATGAAAATGAGCACACAGAATCGCACTATTGTGATCCCCAAGCTGTTTGCAGAGGAGCACTTCCCGCGTGAGAGCCAGAACCTGACGCTGCAGCGCCCGGGCAAGAGCAAGAAATGGCACCCGTGGTTTTCCATCAGGAAGGATCGATGTGGGCACGTCCTCACCGGGTCTCGCTGGGTAGGCTTCCTCCGTGACAATGGTGTGCAGGAGGGAGATCTCTGCGTCTTCCAACCAGTGCAGGGCACTGGCACCAGGAGCAAATTCACAGTCCATCTGCTTCACGAGTCCTTGGGTGCAAGTGGAAGTACTGGTCCGAAGAAAAGAGTAGGATGCTGTTATGGCCGGCCGGCTTAG
Protein Sequence:
- >TRIUR3_19080-P1|Triticum_urartu|B3|TRIUR3_19080-P1
MGGEAAFTSSSTPHSQPQETEAIQCRVESVKRHLSRLVVKSLCAVAADFDVEPMLEVSKSGFSDYQCNNAMSLFPRIRESATNLGNPNAVGQAIADNLPPSRIVESTSVVGPGYVNIVLSSDWIAQEMHVGHIRSTIIGDTLARIFEFANIEVLRCNHVGDWGTQFGMLIQFLFEKFPNGEEAANQAIGDLQSFYRDAKKKFDEDPDFKGRAQQAVVRLQRGEDRYLAAWKSICQISRNEFDLVYKRLNVELEEKGESFYNPYIPRVLEELTGKGLITESKGARVIEGRKPPLIVVKRDGGFNYASTDLAALWYRLNVEMAEWIIYVTDVGQQQHFHSVFSAARMAGWLPDQKEEKYPKASHVGFGFVLGADGSRFRTRSSDGAVRLVDLLDEAKSQSLAQLIKRLTENGQIAKWTDEELDKTSEAIGYGAVKYADLKNNRLTDYKFSYEQMLSDKGNTAVYLQYAHARICSIIQKSNKDVEELKMTEFITLGHPDERSLGLHLIQFAEVVEQICDDLSPHRLCDYLYTLSERFSQFYTNCQTCQCFMISREYHDRFLQIPCQPKAACVHICIGGPESSSLNHHFLLELLCQVHMAGLASQVKRYCDCYKRYAGHLDGKMRCFRGRMTANFRHGMGSRSAVNPVIPYKFIDHFGGNISRTIELESRNGSMYTIEVSKLMNETVLRQHGWEAFVDAHGVEENDSLLFRHIEKSRFEVLVLDSDDCEKVLPSAGIKVASCNVQESCSMDYIDISSSSGDDTTRSPGSQRFAACERGDSSHPRKTALKNDSSSEEDSGEDTDAAEEHSEHELSFELDDIRQTPCAGRAYVLSRCGHLSGAQEERVTRFLQDVRAETPVFVAIMKMSTQNRTIVIPKLFAEEHFPRESQNLTLQRPGKSKKWHPWFSIRKDRCGHVLTGSRWVGFLRDNGVQEGDLCVFQPVQGTGTRSKFTVHLLHESLGASGSTGPKKRVGCCYGRPA