Information report for TRAES3BF048900180CFD_t1
Gene Details
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Functional Annotation
- Refseq: XP_020165473.1 — B3 domain-containing protein Os03g0120900-like
- Swissprot: Q5JNA1 — Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
- TrEMBL: A0A077RV16 — A0A077RV16_WHEAT; Uncharacterized protein
- STRING: Traes_3B_7B2F14FB6.2 — (Triticum aestivum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi2g48597.4.p, Bradi2g48597.3.p, Bradi2g48597.2.p, Bradi2g48597.1.p, Bradi2g48597.5.p
- Hordeum vulgare: MLOC_5109.1, MLOC_5109.2
Sequences
CDS Sequence:
- >TRAES3BF048900180CFD_t1|Triticum_aestivum|B3|TRAES3BF048900180CFD_t1
ATGGAAGAAGACGAGGAGGGGAGGCCTCGCTTCTTCAAGGTCCTCGTCGGCGACTTCGCCCGTCGCCTCGAGATACCTCGAGACTTCCTCGGTTACATTCCAGAGGTGGGCCTCAGGGGTTCCAACATTTCACCTGTTCAAGCCATGCTTAAGCGTCCAGAAGGGAAGACTTGGGTTGTTGAGCTAGAGAAGGTTGACCGCTGTGTATTTCTGACCACCGGATGGCCCAAGTTTGTGGTGGACAATTCTTTGAGGGAATATGAGTTCCTACTCTTCAGACATGACAAGAAAATGGATTTCATGGTTTCGATTTTTGGTCGGAATGCTTGTGAGAAAGCAGTCCGGTCTTCAGGAAGTGCTACTGAAAGTCTAGAAAGGATACTCCCCACTTGTAAGCGAGGACATAGTGGTGATGAACTAACGAAGACCACCAATAATCTCAGGCAGAGTCACTCACTGGTTATGGTACCAGATCAATCTGATACAAAAATATTTCCCTTCCAAGGGAGTACTCAGGGTAATGGACATATCTCTCCACAGAGCTTCGCTGACATACATCTTCATGAAGTAGATGGTTTGAAGGACGAGTTAAAGATATACTTATTGTTGAAGGTGCCAATGGATGATGATAAAGCTAAAGTAATAGCTGAAGTAATGAGCAGATTGCATGTTGACAGAGCTACAGTTGACTTATTCTGTGCTACACTCTGTTTGTATAAGTGGGACTCAGATGCAGCTGCAGAGGTTTTGAACACATGTAGAGGCAAACCACAAATTCCGAACCAGTTTCTAAAGCAGAAACTTGTTCTGCAACTTGATTTTATAAAGAGGGAACTACGACACTTCTTCCCCACAGGGGATGATTGTCCTCCTCAAATATGTGATAGCAGGGAGAGCAGTCTTGAGGAGCCTAACTTGTCGACTCAGGCACTACAAATTTACCTGCCAGCAGTGAAGAGCAAGCTAGTTGACGACCATGAGTTATGTGATTTGTCGTACAAACAGAAGAGGAGAATAGTCAAGTCGCGATCACAGCAAATTTCTGAAACACCACGAAGATCACCACGACTGGCACACTTGAAGAATTCCGGTGGCAGCATAGATAGTGGATTGAAAGAAAAACCTGAAGTGTTAGAATCATCACCATCCAGTAGAATTGATCAGGTGGAGCACAGAGCAGGGCATGCGTGTTTACTCTACGAGAAACCAGAGCATGTTTTGAAAGGAGATCGCCAGCATGCTATAGGTTCCTTATCTCAAGACTTCAAGAGACTCAAACGAACACGAGGTGAGGTGAGCCTAAGTAAGAAACCTCAGCATAATCAAGAAAATGAGGAGAAAATAGATCAAGGAAATAATGGAGAAATCTTTGAAGAGCAAGTCGATAGAAATGCTGCAGAGAGTTCTGAGTTGTTCATGGGGAGGGATTGGATAGACTCGTCACCGCCGACCAAGTCCAAGTTGTCATCTATGATAATAAATGAGTTAAGTTTGACATGGAAGCCCTCAGTACACACCAATTCCCTCGAAACTGTGTTACTTCATATTCAACGTGACAACTTTATGAAGACCATCACACACGTTCAGGGAATCATTTGCAGTTCTCCTTCAGACCTACATTGTGCGGCTATAATTGAAGCTGTTGTGCAGAAAGAAATTCTTAAGTGGGATTCATGTCTTCAGGATGTTGATGCTCAAAGGGTAGTGATTGCATTACTGGAGCATGCTAAAAAAATCAAGGAGATTCACAATTTCAATATGGAGAGCCGGAAGGAAGAGTTTTCCACAAAGCTACAAGATCAGCTGAAGTGGCAGCTCAAAGAACTGGAAAGCGCATGCACTTCCTTGGAATTTGATTACAAGAAAGTAACATGTGATGGTAACATCGCTGTCTCGACATCGCAAGAACAGAAGAAAAAATTGCATGCCCTTCAGGATGAGATCAAAGGCTTGCAGCAGTCCATGATGATGGAGGATGAAATACAGAAATTGGTGCATCAAGTTGCTGAGCATGAGAGCTTAGTACAGAAGTCTTTAATGGAAAGAGTAAGGGTTAAGACGGTTCTAAAGAGCTATAAGCAGGTTCTTGCCGAAGTAAAAGAGCGGCTAGCCTCTGATGAACTTCGATTAATTGATGTCGATGCATTGGTCAAGGTAGAGATGGATAACTTGAGGAAGGAGATCGAGATATCCAAAGGAAGACTCCTAAATATCATTTTCAAGTAA
Protein Sequence:
- >TRAES3BF048900180CFD_t1|Triticum_aestivum|B3|TRAES3BF048900180CFD_t1
MEEDEEGRPRFFKVLVGDFARRLEIPRDFLGYIPEVGLRGSNISPVQAMLKRPEGKTWVVELEKVDRCVFLTTGWPKFVVDNSLREYEFLLFRHDKKMDFMVSIFGRNACEKAVRSSGSATESLERILPTCKRGHSGDELTKTTNNLRQSHSLVMVPDQSDTKIFPFQGSTQGNGHISPQSFADIHLHEVDGLKDELKIYLLLKVPMDDDKAKVIAEVMSRLHVDRATVDLFCATLCLYKWDSDAAAEVLNTCRGKPQIPNQFLKQKLVLQLDFIKRELRHFFPTGDDCPPQICDSRESSLEEPNLSTQALQIYLPAVKSKLVDDHELCDLSYKQKRRIVKSRSQQISETPRRSPRLAHLKNSGGSIDSGLKEKPEVLESSPSSRIDQVEHRAGHACLLYEKPEHVLKGDRQHAIGSLSQDFKRLKRTRGEVSLSKKPQHNQENEEKIDQGNNGEIFEEQVDRNAAESSELFMGRDWIDSSPPTKSKLSSMIINELSLTWKPSVHTNSLETVLLHIQRDNFMKTITHVQGIICSSPSDLHCAAIIEAVVQKEILKWDSCLQDVDAQRVVIALLEHAKKIKEIHNFNMESRKEEFSTKLQDQLKWQLKELESACTSLEFDYKKVTCDGNIAVSTSQEQKKKLHALQDEIKGLQQSMMMEDEIQKLVHQVAEHESLVQKSLMERVRVKTVLKSYKQVLAEVKERLASDELRLIDVDALVKVEMDNLRKEIEISKGRLLNIIFK