Information report for Tp57577_TGAC_v2_mRNA5141
Gene Details
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Functional Annotation
- Refseq: XP_013455146.1 — B3 domain-containing transcription repressor VAL2 isoform X4
- Swissprot: Q5CCK4 — VAL2_ARATH; B3 domain-containing transcription repressor VAL2
- TrEMBL: A0A2K3NLM2 — A0A2K3NLM2_TRIPR; B3 domain-containing protein
- STRING: AES87486 — (Medicago truncatula)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_30924
- Cicer arietinum: XP_012575506.1, XP_004514738.1, XP_004514737.1, XP_012575505.1
- Glycine max: Glyma.03G035200.2.p, Glyma.03G035200.1.p, Glyma.01G133000.2.p, Glyma.01G133000.1.p
- Lotus japonicus: Lj3g3v1427070.1
- Manihot esculenta: Manes.09G117700.2.p
- Medicago truncatula: Medtr4g028130.3, Medtr4g028130.2, Medtr4g028130.4, Medtr4g028130.1, Medtr4g028130.6, Medtr4g028130.5
- Ricinus communis: 29915.m000469
- Ziziphus jujuba: XP_015897450.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA5141|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA5141
ATGGAGTCAAGGTGTTGCATGAACGTGTTGTGTGGTACATCTACGTCGATTCGGTGGCGTAAAGGTTGGCTTCTTCGATCCGGTGAATTTTCCGATCTATGTGATAAGTGCGGTTCTGCTTATGATCAATCGGCATTTTGTGATATTTTCCATGCAAAAGATTCTGGTTGGAGAGAGTGTACTTCGTGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCGAAATCACAGCTTGAAATACTTGATACTGGTGGTGTAAGCTGCATAACCTGCACAAGTTATTCAGGACTTCAACCAATTGCTGGTAATGAAAAGCCTAATGAATCAGAGACAGCAAAGGTAAAACATGTCAGTGTGCAGCAATACTTATCTCTGGCTAACCAATTAAATGCAAGGGGTATGCAAGTAGGGAATTATACAGAAAATGATGGGCTGAGGTGTTGGCTCAAACCTCACAATGTTAATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTAGTATCACAATTTCATCGTGAGTCAAATGGATCGTCTAGGACTGCCAAAGGAGAGAATTATAAGGCAGGCGACATGCAAGATATATATGAATCACTGACACAGACAAATTTGAGTATGACCCTTGCCGCTCCTTTGGTAAATTCGAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCAGCTCCGCTTCTATTGGCATCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGCAAATGCAGGCATGGTGTCTCAGGTTCGTATAGCAAGGCCTCCCGCCGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGACTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTCTCCCCAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGAATCCAGGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGCGTAACGCCCTGTATCCAGTCTATGCAACTGCAAGCTGGGGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGCACTGTCTAAAAAGTGGAACTCAGTTGGTGGTGACATGGATTGGCATAATGTAGAAATGCCCGAAAGCAGGAAAAGAGATGCCTTGTCTTTGCCACCCGTGCTGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACTTATTTGAAGAATATGAAGAACCTCCTGTCTTCGGAAAGAAGAGTATTTTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTTAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGAGAACTGGATAATCTTTTGAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTCTGGAACGCGAATCTCCTGGTCTTGATGCTTTGGCAAATGCTGCCGTACTTGGAGATGATGCAAGTGAATCTGGTACGACACCAGTCATGACCACTACAAAACATCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGAAAACACAAACCTACGTGCACTTGTAACGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAACGTGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATATAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTAATGGTTCAGAGAATGGAGCAAGGGTGCCAAATGAGTTAGATTCAAGGAGTCAAGACCAAGTGGCTGAAGCTGCAACGGGACAATTAGACTTGAATTGCCAACCGGACCGGGATGACGTGCAATCTGGACCAAACACTCTAAGCATGATGACTCTACTTGAAGAAGCAAATCTTCCATTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAAACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGCAATACTGCTTCTGTAGTTCATGAACAGGAAGGCAGTCCTGAAGAAAACAGCAATTCAGTTTCTTGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA5141|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA5141
MESRCCMNVLCGTSTSIRWRKGWLLRSGEFSDLCDKCGSAYDQSAFCDIFHAKDSGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCTSYSGLQPIAGNEKPNESETAKVKHVSVQQYLSLANQLNARGMQVGNYTENDGLRCWLKPHNVNMDGPSTEIKPEVLPSVGEFGSTLVSQFHRESNGSSRTAKGENYKAGDMQDIYESLTQTNLSMTLAAPLVNSNPFHNVLVDEREQSKMSAPLLLASRSRHLLPKPPRPTLSPGLEANAGMVSQVRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQSQKGCSETHLNALSKKWNSVGGDMDWHNVEMPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSNGINEQWTQCDSCLKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNKEFKKQRLAAASQRPALERESPGLDALANAAVLGDDASESGTTPVMTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSYRTKDESEVDSTSRHLTPVNGSENGARVPNELDSRSQDQVAEAATGQLDLNCQPDRDDVQSGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCNTASVVHEQEGSPEENSNSVS*