Information report for Tp57577_TGAC_v2_mRNA37953
Gene Details
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Functional Annotation
- Refseq: XP_003593434.2 — B3 domain-containing protein Os07g0563300 isoform X2
- Swissprot: Q0D5G4 — Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
- TrEMBL: A0A396J3B3 — A0A396J3B3_MEDTR; Putative transcription factor & chromatin remodeling CW-Zn-B3/VAL family
- STRING: AES63685 — (Medicago truncatula)
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_17062
- Cicer arietinum: XP_004485711.1
- Citrus sinensis: orange1.1g002554m, orange1.1g002739m, orange1.1g002489m
- Cucumis sativus: Cucsa.045980.2, Cucsa.045980.1
- Glycine max: Glyma.13G245900.1.p, Glyma.15G067900.1.p
- Gossypium hirsutum: Gh_A05G1407
- Lotus japonicus: Lj6g3v2080300.3, Lj6g3v2080300.2
- Malus domestica: MDP0000274788
- Medicago truncatula: Medtr2g011940.1, Medtr2g011940.3, Medtr2g011940.2
- Prunus mume: XP_008224939.1
- Prunus persica: Prupe.4G036100.1.p
- Pyrus bretschneideri: Pbr000285.1
- Ziziphus jujuba: XP_015887956.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA37953|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA37953
ATGCTTCTGCATTACTCAATAGACAAAACTGTGATTGGTGGTAATTGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATACTTCTGGTTGGAGGAATTGTGAAACTTGTAGAAAGCGAATTCATTGCGGGTGTATTGTTTCAAGTAACACCTTTGTATTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAGTATTATTTTGCCATCTAACTTGGCGTGGCCACAATCTTTATCCTTTCAAAATCGTTTATCGGAGAGATATAGAGACATATCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTGTTCAATTCAGCTTCTTCTTCTGACCAGCCTGCGGATGTGCACTCTTTAGGTGAATTATCAAATAATTTTGACAAAACTTATGGCAATGAAAGGTTACCCACCTCATCCTTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCAGCTAATTGGAATGCCAAATTTGGTTCAAGGGAAATGGTGCTTATGAATGGATTGAGGAGTGAGGACAAATCAGGCCCGTGTTTAAATATGTGCCAACAGCCTCATTCTCTGAAGGAAGAATCATCTTCTCAACCATTTGGTTTATCAGTACCTTATTCATCGCCGAATGAAAGAAATGGTCAAATTGGGGTAACCGGAATTCATCCACAACAAACTCCACCTCATCCAGGCAATCATTTTAGCAGCACTGTGCAATTAGCTCTTGACCCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAATTGTTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGTTACAACAAATATCTATTGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAAACACTGAGTGCTAGTGATGCTGGGAGAATTGGGCGTTTGGTACTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGGTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACGTTTAGCCGGTTGGAGCCTGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATGCTATGCCACCACCTGATCAGGATAATGAAGCTAGTAAGACTGGAAACGGACTTTCTGCACAAGAAGTTGAATTGACTGATCCCAGTTCTTGGTCAAAAGTTGATAAGTCAGGATACATTGCAAAAGAAGCACCGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAGCAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATGGGAAATGAGGATATAATAGAACTGAAGATTACATGGCAAGAAGCTCAAGGACTGCTCCGCCCCCCTCCTAACCATGTTCCAAGTATTGTGGTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGGAATAGTAGTACTTTGAATCCATTGGATTCTCCGGTGCTTGGGAAGCCAACTATTTTCACTACTGATAATATGGGTGAAAAGATTCAGTGGTCTCAATGCGAAGATTGTCTGAAGTGGCGTAAATTGCCAGCATCTGCACTTCTTCCGTCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTTACAGCAGAGCAACTTGAGAATTTGTTACCTCCTTATAATTCAGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTAGATACACTTGCAAATCTAGCTATCCTAGGGGAAGGGGATGCTCTCCAGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCAAGTGGAAAGGGCCCCAAACATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGTAAAAAGATTCAGCAACAGAATTCCCAGCAATTGCCTTCACCCGAAATTTTGCTTGATGATGATTCCTTGCATAATAGTAATACGGGTGATAGTAGCCCAAACATGAACAAGGAGGGTAATGACTGTTCTGATGATGATCCTCACCGGATAAAATCATCTGTGTCTCCGTTCAAAGGCCAAATTGACCTTAATATCCAGCCGGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTCCATGATGCTACTGAGATGTATCTCAAGCAGCAGCAACAGCAGCAGCAGAAGACTGTGTTGAACTCTGGAACTGGAGATTCATCAGGTAGTCAGTCACAACAGGTAGATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATTCATGGTAGCAGTAGTCATAATGCAGATAAGGAGCCTGTCCAGTCTTTATATATGAATGTGTAA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA37953|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA37953
MLLHYSIDKTVIGGNCSAFEEGRFCDIFHANTSGWRNCETCRKRIHCGCIVSSNTFVLLDPGGIECFTCARKSIILPSNLAWPQSLSFQNRLSERYRDISAKSWSQLAGSGPVPWKQAPSLFNSASSSDQPADVHSLGELSNNFDKTYGNERLPTSSLEKKNEDLSGISANWNAKFGSREMVLMNGLRSEDKSGPCLNMCQQPHSLKEESSSQPFGLSVPYSSPNERNGQIGVTGIHPQQTPPHPGNHFSSTVQLALDPSGEAQVRNGRPRADARGRSQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGVPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNAMPPPDQDNEASKTGNGLSAQEVELTDPSSWSKVDKSGYIAKEAPGSKSLISRKRKSNILGSKSKRLKMGNEDIIELKITWQEAQGLLRPPPNHVPSIVVIXXXXXXXXXXXXXXXXXXXLWNSSTLNPLDSPVLGKPTIFTTDNMGEKIQWSQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPYNSVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGDALQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKIQQQNSQQLPSPEILLDDDSLHNSNTGDSSPNMNKEGNDCSDDDPHRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEMYLKQQQQQQQKTVLNSGTGDSSGSQSQQVDVVREEKLSNGVIHGSSSHNADKEPVQSLYMNV*