Gene Details:

Protein Features:

Annotation Proteins:

  • Refseq:  XP_003593869.1  — auxin response factor 6
  • Refseq:  XP_010647449.1  — PREDICTED: auxin response factor 6 isoform X1
  • Refseq:  XP_019074220.1  — PREDICTED: auxin response factor 6 isoform X2
  • Refseq:  XP_024632506.1  — auxin response factor 6
  • Refseq:  XP_024632507.1  — auxin response factor 6
  • Swissprot:  Q9ZTX8  — ARFF_ARATH; Auxin response factor 6
  • TrEMBL:  A0A2K3PD91  — A0A2K3PD91_TRIPR; Auxin response factor
  • TrEMBL:  A0A2Z6MMZ8  — A0A2Z6MMZ8_TRISU; Auxin response factor
  • TrEMBL:  A0A445BCC3  — A0A445BCC3_ARAHY; Uncharacterized protein
  • STRING:  AES64120  — (Medicago truncatula)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding
  • GO:0005515  — Molecular Function — protein binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Tp57577_TGAC_v2_mRNA27151|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA27151
    TTGTATTTGCAGCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGAATTCTGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTACTAGTGACACAAGCACTCATGGCGGATTCTCTGTGCCTCGCCGCGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCACCTGCTCAAGAGTTAATAGAAAGGGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGAGGGGAAAAGGGAGTCCTAGATTTAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTATCTTTGCCAGCAGTTGGAAGTAGAGTTATAATAAGCCTTGTGGACTGTGTATTACATTCTTTTACTAATGGTGAGAATAAAGTGGTTGTGTCTACTAACAAGGAAGTGGATGGTCATATCCCAAACTATCCAAGCTTACCTCCTCAGCTTGTGTGTCAACTTCATAATTTGACTATGCATGCTGATGTGGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGAATTCCGAGTAAACAACCAACGAACTACTTCTGCAAGACTTTGACAGCTAGTGACACAAGCACTCATGGCGGATTCTCTGTGCCTCGCCGCGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCACCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGAGTGCTTTGGACGCCTGACATGACAGATTTACGAGGGGTCAAGATGTGTCTACTTTTGTCTGGAGGGCAACCAATGACTGTTGATGCGCCCATCAAAGAAGATGCGTGGATACCCGAGATGAATCTTTTAGCCACAGGAAGCTGGGACAAAACCATAAAGTATTGGGATACTAGGCAGTCCAATCCAGTACATACTCAGCAACTCCCTGATCGCTGTTATACGATGTCAGTGCGACATTCTCTGATGGTTGTGGGAACTGCAGATAGGAATCTGATTATCTTCAACTTGCAGAATCCACAGGCATGA
Protein Sequence:
  • >Tp57577_TGAC_v2_mRNA27151|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA27151
    LYLQQEQKEAYLPAELGILSKQPTNYFCKTLTTSDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIERDLHGNEWKFRHIFRGEKGVLDLELWHACAGPLVSLPAVGSRVIISLVDCVLHSFTNGENKVVVSTNKEVDGHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRVLWTPDMTDLRGVKMCLLLSGGQPMTVDAPIKEDAWIPEMNLLATGSWDKTIKYWDTRQSNPVHTQQLPDRCYTMSVRHSLMVVGTADRNLIIFNLQNPQA*