Information report for Tp57577_TGAC_v2_mRNA2219
Gene Details
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Functional Annotation
- Refseq: XP_029124522.1 — putative B3 domain-containing protein At5g58280
- TrEMBL: A0A2K3P8L1 — A0A2K3P8L1_TRIPR; B3 domain-containing protein
- STRING: XP_004490734.1 — (Cicer arietinum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_36307
- Cicer arietinum: XP_012568478.1, XP_004490735.1, XP_004490734.1
- Glycine max: Glyma.02G237500.2.p, Glyma.02G237500.1.p, Glyma.02G237500.4.p, Glyma.02G237500.3.p
- Juglans regia: WALNUT_00015532-RA
- Medicago truncatula: Medtr2g102450.2, Medtr2g102450.1, Medtr2g102450.3
- Petunia inflata: Peinf101Scf00507g02006.1
- Prunus mume: XP_016651490.1, XP_016651487.1, XP_008239059.1
- Prunus persica: Prupe.6G038900.2.p, Prupe.6G038900.1.p
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA2219|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA2219
TTGTATCACCCATATCACATCCTCATTCATAAACTCTTAATTACTAATTTCACTTCAAATTTTGCTAATTCAACCTTAGTAGACATGAAGAGACAAAGAGATATAGAAGGGTTAGAAAGCATAGATTTAGCAAATTGTCTAATGATGCTCTCTTATCCCCAACAACAACAAAACAATAAACCAAATCAAAAAAGTTTTGGACCAATGGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCATTTCAAGCACTTGGTGGCCATAGGGCTAGTCATAAAAGATCAAAATTTGAAGGGGATGAACTCATCAAAGCAAATGCATTGACTTTGGGAAATAAACCCAAAATGCATGAATGTTCCATTTGTGGTCAAGAATTTTCTTTGGGACAAGCATTAGGTGGACACATGAGAAGACATAAAGCTATCATCAATGAAGAGGTTGTTTCTTCAATGGAAAAAGTTGTGAAGTTACCAATTTTAAAGAGATTGAATAGTGCAAGGATTATGTGCTTGGACTTGAACTTGACACCATTAGAGAATGATTTGAAGTTATTGTTTGGAAAGATGGCTCCCAATCTTGATGTTTTAGTCTGA ATGGCAAAGGGTTGCTCCAGCAACAGCTATGAAGAGGTTAAGAAACAAAGAGTTGAAGAAAACAAAAAGAGGTTTGAGGAATTAGGGATTTCAAAGATGTCAAAAAATTTGACCAAGGTCACAAGTCCTGCGAAGAAGTCCCAGAATCGCCTTCCCAAACTAAAATTAAAGACTAATGAAGTGGAACCTAGGCGCTCTTCTCGTCCAAGAAACCATGTTAAGTCATACACTGAAGAGTTTAGCACAGACCTTCCAGATAGGAGTTCATATATGCGGAAGAGGTCAAGGTCAAGTTCATCATCATGGGAAAGCTACGTTGCAAGGCCTCTAGATGAAATCAAAGTAGCTACAGAAAGAGAAAGAATGCGTGCTTACGAGGCTGCAGAGGCACTCCAAATCAAGTTGCAGTCTTCGAAGCCATCATTTATCAAATCAATGGTCCGGTCTCATGTTTATAGTTGTTTTTGGTTGGGTCTTCCTAATAGATTTTGTGTGGAACACCTTCCAACAACGGGGTCTAACATGACTTTAGAGGATGAAGATGGTTCAGAGTATGATGCCAAATACATTGGTAGTAGAAGTGGGCTAAGTGGTGGCTGGAGAGCTTTTGCATTGGAACACAAATTGGATGATGGCGATGCACTTGTTTTTGAATTGGTTGAACCAGCAAGGTTTAAGATTTATATTGTTAGAGCATTTCCAAATGTAGATGAAGAGGAAAGCGAAGAAGAAAACGCTACTACTCTTGAGCCAAAAGGTGAAGCACAAAATGAAATTGCGAAACCAAAGACTAGATCTTCTCAGAAACAAATGCAAAAGATGTCTGAAGTATCTACTGCTCTTGAATCAAAAGATGAAGCGCAAAATAAAATTGTGAAACCAAAGACTAGATCTTCTCATAAACAAATGCAAAAGATGTCTGAAGTATCTACTGCTCTTGAATCAAAAGATGAAGCGCAAAATGAAATTGTGAAACCAAAGACTAGATCTTCTCAAAAACAAATGCAAAAAATGTCTGAAGTATCTACTGGTCTTGAATCAAAAGAGGAAGCACTTGGAACTGTGAAGCCGAAGGCAGTTGCAAAGTTGTCAAACAAGAAAAAAAAGTCGAAAGAAGGTAATGAATGTGAAATTGATCATTCAATCAATACTGAGCAGCTTCTTCCTAAAGATAATGTTGTTGAAACTGTCGATGCTAACATGAGTAAGAAGAAAGAACATGATCTTGAGTCAACAAAAGATAAACCAGATGAAAAACGAGCTCCTAAGTTTTTTCGAAAAAAATCAGCTCCTAAGTTTTTCCGGAAGAGAGTATAG ATGGCAATGAAGAGACAAAGGAGCAATGAAGAAAGCATAGATTTAGTAAATTGTCTAATGCTACTTTCTTGTCCACAACAAAAAACCATTGAAAATGGTGAATATGAATGTAAAACATGCAACAAAAAATTCTCATCATTTCAAGCTCTTGGTGGCCATAGAGCTAGTCACAAGAGAGTTAAATTATCTGAAGGTGAAGAACTCAAAGAACAAGCAAAATCTCTTAGTTTATGGAACAAACCCAAAATGCATGAATGTTCTATTTGTGGTATGGGATTTTCTTTGGGTCAAGCATTAGGAGGACACATGAGAAAACATAGAACTCTTATCAATGAAGGGGTTTCTTCTATGAATGAAATTATTGCAAAAATTCCAATTTTGAAGAGATCAAATAGTAAGAGAGTTATGGGATTGGACTTGAATTTGACACCTCTGGAGAATGATGATTTGATGATGTTTGGAATGAAGTCACCCATACCCCTAACACCAATTCCTCTTTCTTTGTTCTGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA2219|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA2219
MAKGCSSNSYEEVKKQRVEENKKRFEELGISKMSKNLTKVTSPAKKSQNRLPKLKLKTNEVEPRRSSRPRNHVKSYTEEFSTDLPDRSSYMRKRSRSSSSSWESYVARPLDEIKVATERERMRAYEAAEALQIKLQSSKPSFIKSMVRSHVYSCFWLGLPNRFCVEHLPTTGSNMTLEDEDGSEYDAKYIGSRSGLSGGWRAFALEHKLDDGDALVFELVEPARFKIYIVRAFPNVDEEESEEENATTLEPKGEAQNEIAKPKTRSSQKQMQKMSEVSTALESKDEAQNKIVKPKTRSSHKQMQKMSEVSTALESKDEAQNEIVKPKTRSSQKQMQKMSEVSTGLESKEEALGTVKPKAVAKLSNKKKKSKEGNECEIDHSINTEQLLPKDNVVETVDANMSKKKEHDLESTKDKPDEKRAPKFFRKKSAPKFFRKRV*