Information report for Tp57577_TGAC_v2_mRNA17410
Gene Details
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Functional Annotation
- GO:0000723 — Biological Process — telomere maintenance
- GO:0006281 — Biological Process — DNA repair
- GO:0003677 — Molecular Function — DNA binding
- GO:0003678 — Molecular Function — DNA helicase activity
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn170521
- Lactuca sativa: Lsat_1_v5_gn_3_99781
- Malus domestica: MDP0000120576
- Medicago truncatula: Medtr6g051880, Medtr1g043690, Medtr2g097380.1, Medtr2g062330.1
- Oryza sativa: LOC_Os01g14200
- Solanum lycopersicum: Solyc09g042263.1
- Solanum melongena: Sme2.5_05169.1_g00001.1
- Zea mays: Zm00001d028975
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA17410|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA17410
ATGAATAGAACTGAAAGTAATCCATCAGATAAGTTGAAAAATTTCATTGGTGATTTGAAAATTAAGAATTTGCAAGATTTATTAATTTGTAAAGAAAATGGTACTTTTGTTGTTGTTGCTTGGTTTGAGTCCGTTGTTGAAGGAATTGATGTCTGGTATCCTGATAGTTCAGTGAAAGATAAACCAAGGTTCAGAATGAAGGTGATGGTTAAGGATGGTGAGAAATTTGCTGTGTTCTGTTTGTTCGATGAAGAGGTTGAGTATTTGGCAATTGAGACCTGTCCATTGTTGGCTGCAATGGGAGAGTCCTGTTCACTCTTCCCATTTGAGATGGATTGTATGTATGGAGATGGTGTTTTGTATAAGGTTGAGAAAATTGAGTCGGAGAAGGATCTTGGGTTTCCTCAATTTAAAGTAATTTCTATTTGCAACGAAGTAGTGGTTGTCAATGAGTTCATTGATCAATATATCACTTCTGTCCTGGATATTTCCCCTAAATTGAGCTCTGCTTCAACTTTTTCTGATGATTCTTCTGAAGTATCAAATTATTTGGATTTTTCTGTTCAATTCCACGGCCATGGTTGTGTTCCTGATGTTTCCACTGCTGTTGATAATCATGTTGATTCAAGCCATTCCAAATTGAAATTGTGTTTGAGTGGTAATGGCCTTGGTGTTGATCACACTGAAAATCTTACTGGTGCCATGTTCCTTGGATCTAGACTTGGAAAGCGCAAGATTGATGTAGCTTTTGCTAATGCTGGGAAAGAAAATGTAGAGAAGCATTCCAAGAATGATAATGTGAAAGTTGGTGGAAATGCTGCTGGTGAGTATCAGTTGAGGGTTTTAAGAAAGTGGTCTGTTTTTAACAGTGTTTTTCCTGGAAATGTTGAATCGGTTGATATGGTGATGATCGACAGGAATGGTCATAAAATCCAAGCCACTATTCCTAATCTTTTGTTGTGTCTTTTCGATAACCTAATAGATGAGGGTAACGTTTATGTTTTGTCTAATTTATCTGTGACTTACAACTTGCATGAGATTCTAGGAAGTTATAATAGGTATATGCTTGTGTTTAATGTTAACACTAAGGTGAATCTTTCTTCGAGTTCTTCTATTGCACATTATGGGATGTCCCTCATCGGATCCGATAATGTTCTCCAGCTTTCCGAAAGATTCAAGTATTTAGTTGATGTAATTGGTGTGATAACTTTCATCAGACACAACAAAAACTATTTCGATGACGGCACCATATCCACGACAGTTTCTTTCAAGCTTACGGATCATAGAAATTCGTATGATTGTGAGCTGTGTGGTGACTATGTTGATCTTTTTCGTGTATTGATGGAGAACCAACCCCTAGGGTTGCCCATTGTTGTCCTCCAGTTTGCTAAAATAACTATGCAACAAGGTTCCATTGTTGTTCAAAGTGTTGACCATGTCACAAGGCTCTATGTTAATCCAGTCATTCATGAATCAATACAATTCAAGACAGGATTGATTCTGGCACTGAACCAGACCAGAAGACTTCTTGGTAATTGTCCGACGGATAAATCGGTGGGCTTTAGGTTTGATGTCAGTTACCAATTCAAGACAATTTCTGAGCTAATGGATGACCCCCAAACTGGTATTTTTATTGTCAATGCTCGCATAGTTGATATGATTGAACTGAACCCGTGGTGGTATCCGGTGTGTCGTTGTGATATCATTGTTGAGAGCTACCTCGGTGCCTATTTTTGCGAGAACTGCCACGCAACAGAATTTTCTGCTGTTCCAAAGTATAGAGTTAAAATGGTGTTAGAAGATGAAACTGGTGCCTGTTTTATTGAGGCCTATGATCATGTTATGCTTCCTATTTCATTGGTTGACCCTAATAATCCGATATTGCCTGAGGCTTTTTTTCCCCGTGCATTTGACTCGGTAATGGGCAAAAGTATAGTTTTGATCCTGCACAAGACAGTTCACATTGATAAATTTCTTGATCCAGTATATGAGGTTCGTTGTGTGTCCGATGATCCTCAGGTGATGAATTTTTATGCTAGCATTGGTCTTTGCAGGATTCCTTCAAAGGTTGTTCCAAATTTGATTGATCCAGAATGCAATCTGATGAAAAAAAAGGTGTATCGTCCTCCTGTTACCTCTACCGAACGTTTGCTTGACGAGTATCTAGGACCGGTTTATCGCAGGAATCCGCCATGCGACGATGCAGAGAGTTCTTCTGCTGCTGCTGGGAAATCTAGATTGAATTTTCCCAGGGAATACACCAGAAATTGTTTAATGAACTCTGATAGGAAGATCTATCTTATTGATGTTGCATCTGGAAGAGTTTACAATTCAAAGATTTTTACTTCAGGTCAAAATAAAGAAAACAAATATGTTTACTCTTGTTGGAAGCAATTTGTGACTGAGAACAAGTTGAAGTTCAGAGATAAGGTTATCTTCAATGCCACCACCGGTGATAATGTTATCCAAGTCCAGATCCTGCGTCGTCGCCGTCGTTCATCTCGTGCTGCTTGTTCATACGAGGATGAAAATGCTCTACAGGCTGATTTTACAAACAATAGGAAATTTCGATCAAGTGAAGTAGTAGATTTTGTTATGTCCCACGAGGATTTAAAAGAATCATGTCTCATTGAGATTGACAATTATTTGCGGGCAAATGGAAAATCTCTGGAGGACTATGAATGCATGCCGAAGTTAAAAGAACAAAATAATGGTATTTTCAATAACATTTTACTCGAGAATGAATTTAATTATGACTATGATGATATGAGGATTCTTCACAATGAACATGTTGGTAACTTAAATTCAGAGCAATTGTTTGCATATGAAGATATTTATAAGGCTGTTGATAATGGACTTGGATCTATGTTTTTTGTTGATGGATACGGTGGGACTGGGAAGACGTTCTTGTGGAAAACTCTTTCTTACAAACTTCGTTCGGAGGGAAAAATAGTTGTAAATGTTGCATCTAGTGGTATAGCTTCTATCCTACTTCCTGGTGGTAAAACTGCCCATTCACAGTTTGGAATTCCTTTAGTTCTTACCAAAGAATCTTGTTGCCAAATTGATAAAGGTAGTAAAAAGGCACAGTTGCTGATTATGACTAGCTTAATTATTTGGGATGAGGCTCCTATGATTAATAAGTGGGCTTTTGAAGCTTTTGAAAGAACTCTTCGGGATATAATGAGTGAAGTTGATGTTAAGAATAAATCTCTGCCATTCGGGGGGAAAACTGTCGTTTTTGGTGGAGACTTTATTCAAATTTTGCCTGTTATTCCTAAAGGATCTCGCGCTGACATTGTTCATGCAACAATTAATTCATCATACCTTTGGCGCAAATGCAAAGTTTTGAGATTAACAAAAAATATGCGCTTACAATTTTCATCCAATTCAGTTGAAAATGAGCAATTACGAGAGTTTTCCAGCTGGATACTTGATATTGGAGATGGTAAGATAGGTATTACTGAAGATGGTGAGTCAATTGTTGAAATTCCTCAAGATATTTTAGTTAAGAGTTCTCTGAACCCAATAGGTGATATTGTTGAGGCAATTTATCCAAATTTGCTTGAAAATATATATGTTCCAGATTTCTTTCAAGATAGGGCTATTCTTGCTCCAACATTGGATGTTGTTGAAGAAATAAATGATTATGTACTTGCTCTCATGCCCGGTGATGCGAAAGAGTATCTCAGTTGTGACTCAATCTCAAAAGGTGATGATGATGTTGGTGTGGATCTTAGATGGATTACAACTGAGTTTTTGAATGAAATTAAGTGTTCTGGAATGCCAAATCATAAACTCAATATCAAAGTTGGAGCTGTCATTATGCTTTTAAGGAATATTGATGTTTCGTCTGGGCTATGTAACGGCACACGTCTTATTGTTTTCTACATGGGGAACATTGTCATTGGTGCTAAAATCGTAACAGGAACTAATATTGGTGATATTGTTTATATCTCCCGAATGAGTTTGGTACCATCAGATGCCAATGTTTCAATAAGTTTTAGACGGCGCCAATTCCCCTTCTGTGTTTGTTTTGCCATGACAATTAACAAGAGTCAAGGACAAACATTGTCTCACGTTGGTTTATATCTTCCGAGACCAGTTTTTACTCATGGTCAGTTATATGTTGCTGTTTCTCGTGTTAAAACTAGAGCAGGTTTGAAGATTCTTATAGTCGGTGATGATGGTCTAGCCAAAACAAGTACCATTAATGTTGTTTATCCTGAAGTTTTTCAAAGAATTTGTAGATGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA17410|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA17410
MNRTESNPSDKLKNFIGDLKIKNLQDLLICKENGTFVVVAWFESVVEGIDVWYPDSSVKDKPRFRMKVMVKDGEKFAVFCLFDEEVEYLAIETCPLLAAMGESCSLFPFEMDCMYGDGVLYKVEKIESEKDLGFPQFKVISICNEVVVVNEFIDQYITSVLDISPKLSSASTFSDDSSEVSNYLDFSVQFHGHGCVPDVSTAVDNHVDSSHSKLKLCLSGNGLGVDHTENLTGAMFLGSRLGKRKIDVAFANAGKENVEKHSKNDNVKVGGNAAGEYQLRVLRKWSVFNSVFPGNVESVDMVMIDRNGHKIQATIPNLLLCLFDNLIDEGNVYVLSNLSVTYNLHEILGSYNRYMLVFNVNTKVNLSSSSSIAHYGMSLIGSDNVLQLSERFKYLVDVIGVITFIRHNKNYFDDGTISTTVSFKLTDHRNSYDCELCGDYVDLFRVLMENQPLGLPIVVLQFAKITMQQGSIVVQSVDHVTRLYVNPVIHESIQFKTGLILALNQTRRLLGNCPTDKSVGFRFDVSYQFKTISELMDDPQTGIFIVNARIVDMIELNPWWYPVCRCDIIVESYLGAYFCENCHATEFSAVPKYRVKMVLEDETGACFIEAYDHVMLPISLVDPNNPILPEAFFPRAFDSVMGKSIVLILHKTVHIDKFLDPVYEVRCVSDDPQVMNFYASIGLCRIPSKVVPNLIDPECNLMKKKVYRPPVTSTERLLDEYLGPVYRRNPPCDDAESSSAAAGKSRLNFPREYTRNCLMNSDRKIYLIDVASGRVYNSKIFTSGQNKENKYVYSCWKQFVTENKLKFRDKVIFNATTGDNVIQVQILRRRRRSSRAACSYEDENALQADFTNNRKFRSSEVVDFVMSHEDLKESCLIEIDNYLRANGKSLEDYECMPKLKEQNNGIFNNILLENEFNYDYDDMRILHNEHVGNLNSEQLFAYEDIYKAVDNGLGSMFFVDGYGGTGKTFLWKTLSYKLRSEGKIVVNVASSGIASILLPGGKTAHSQFGIPLVLTKESCCQIDKGSKKAQLLIMTSLIIWDEAPMINKWAFEAFERTLRDIMSEVDVKNKSLPFGGKTVVFGGDFIQILPVIPKGSRADIVHATINSSYLWRKCKVLRLTKNMRLQFSSNSVENEQLREFSSWILDIGDGKIGITEDGESIVEIPQDILVKSSLNPIGDIVEAIYPNLLENIYVPDFFQDRAILAPTLDVVEEINDYVLALMPGDAKEYLSCDSISKGDDDVGVDLRWITTEFLNEIKCSGMPNHKLNIKVGAVIMLLRNIDVSSGLCNGTRLIVFYMGNIVIGAKIVTGTNIGDIVYISRMSLVPSDANVSISFRRRQFPFCVCFAMTINKSQGQTLSHVGLYLPRPVFTHGQLYVAVSRVKTRAGLKILIVGDDGLAKTSTINVVYPEVFQRICR*