Information report for Tp57577_TGAC_v2_mRNA14355
Gene Details
|
|
Functional Annotation
- Refseq: XP_013460465.1 — B3 domain-containing transcription repressor VAL1
- TrEMBL: A0A2K3P3E5 — A0A2K3P3E5_TRIPR; B3 domain-containing protein
- STRING: XP_004500368.1 — (Cicer arietinum)
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy016325
- Cajanus cajan: C.cajan_46657
- Cicer arietinum: XP_012571339.1, XP_004500369.1, XP_004500368.1
- Glycine max: Glyma.11G197900.2.p, Glyma.11G197900.1.p, Glyma.18G052100.4.p, Glyma.18G052100.3.p, Glyma.18G052100.2.p, Glyma.18G052100.5.p, Glyma.18G052100.1.p
- Lotus japonicus: Lj1g3v4117200.1
- Medicago truncatula: Medtr3g467380.2, Medtr3g467380.1
- Ziziphus jujuba: XP_015874689.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA14355|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA14355
ATGGGTTCTGACATTGGTATCGTGAATGGTTCGTGTGTTCATGAATGGAAGAGAGGTTGGCCTCTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATTTGTGGAGGAATGGAAGTGTGACATCATTGACTCATTATCTGCTTATGAGAATTCAGTTTTCTGTAATAAATTCCACCGTCAACAAACTGGTTGGCGAGAATGTAACTTTTGCAAGAAGCCTATTCACTGTGGATGCGTAGTATCTAGATCTCTGTTCGAGTATCTTGACTTCGGTGGTATAGGTTGTGTTAGCTGTGTAAAAACTTCCCAACATAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATTGACCCAGAATAATGCAAGGGATATGAGTTCTGCTCATTTTGATGGCAGACTGTTTGCGAGTAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTCGTTGAAGCTAGTGAATCCATCCATATGAATCATGCTCCAAGAGACAACATTATTACATCTAACGGGAAAAACAATCAAGAAGTTAAGCCTTCATTCAGGGAAGGGGATACTGGTTTTTCAAATGTGATTAAACCGTCTATTCAATCATTAACTTTTTCTACATTAGAAAATAATAGACCAACATGGGAGATGAAAAACATCCACGAATCAAATGCAAAGCCGTCTTTGAATATGTGTTTGGGAAATCCGTCAGGGAACAACTCTTTCCCTCTTTCTGCTGGAGAGAATATAGAAGGAAGACTTGAAGGAAAAGTTTCTCCTCCCTTTCATCAAGGGCCGAGATCTCGCCCTATACTGCCCAAACTATTGAAGACTGGCCTTACCATGAATGGAGAAACTGAAAAAGGGTCAACTTCTCAACCACGTATTGCCCGGCCTCCTGGTGATGGGAGGGGCAAGAATCAGTTACTTCCTAGATATTGGCCTAGGATTACAGATCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAATCCACTGTAGTTCCATTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCCGAGGCTTATTTTCCTCATATTTCACATTCTGAAGGCCTTCCTTTGCGGGTCCAAGATGTAAAGGGGAATGAATGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGGAGTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATTGGTTTCCGAAAGTCATCAAATTCCACAGATATGCAGGATGCTTCTCCACCTTCACATTCTAATGGCCTTTCTGCAAAGGGAGCCACCTTTTCTGGTGGAGCTGATAATCTTCCATCAAGAAGTAATTGTGGTGATTTTCTCCGTTCACCAAAAGGGAACGGGGAACTTCTCTTAAATGGACATCCGGAATCTCCGCATTTGGGTACAGGAGCTGCTGGTTTGCTAAAAACTGAAAATTGCGAGATGACAAACAATAATTCACTGGACCAAAAAATTTCAGCTTTAGAGAAGAAGAGGACTCGAAATATTGGACTTAAAAGTAAGAGATTGCTTATTGGTAATGACGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCGCAGGACTTGCTTCGTCCACCGCCTAGTGTCAAGCCAAGCATTGTCACAATTGAAGACCAAGTATTTGAAGAATATGATGAGCCCCCGGTTTTTGGAAAGAGAACAATATTCAGCGCCTCTTCATCTGGGATGAAGGAACAATGGGCTCAATGTGATGATTGTTCTAAATGGAGAAAGTTGCCGGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGATCTTCATGTTCTGCACCAGAGGAGCTGAGCTCAAGAGAATTAGAAAATCTTATGAAAACCAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGATGCTCTCGCCAGTTTAGCAGTCTTAGGAGAAAATCTCATTGACCCTACTGATTCCTCAGCCGGAGCCACCACTAAACATCCTAGACATCGCCCAGGCTGCTCTTGTATTGTGTGCATTCAGCCCCCAAGTGGAAAAGGAAGACACAAGCCAACATGTACTTGCAATGTGTGCACGACCGTGAAGCGTCGGTTCAAAACTCTTATGCTCCGCAAGAAGAAACGCCAGTCAGAGCGGGAAGCAGATGCCGCTGCCAAGAAAGATCAAATTCGCAAAAAAGACGATGACTTAAATACCAATGGTGGAGCATCAAGAGATGATGCAAATCCTTTGGAAAAAGAGGGAGGTTTAAATAGAAGTCAAACCGAGGTTGGTGAGTCCAGTGCTGGAAAGATAGATCTGAATAGTGATCCAAACCGCGAAGACTCACAATTGGATAATATCGCAAAACTTCGTCGTGAACTATCGGAACGTATGAATATGAACCAAAATGTTGGTCTAAGAACCATTAATACTGAAGTGCAGGAAGGTCAGCAGCATTCTTCTTTGGTCACTCAATCTAATGGTGAAGATAAGAGACACTTGTCCGATGATAGAAGCATTGCATCCATTATCTTAAACAAAGAAAGAAGAGATGAAGTATACAATCAATCAAATGAAAGTCAAAACAATATGTCTTAA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA14355|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA14355
MGSDIGIVNGSCVHEWKRGWPLRSGGFAQLCFKCGFVEEWKCDIIDSLSAYENSVFCNKFHRQQTGWRECNFCKKPIHCGCVVSRSLFEYLDFGGIGCVSCVKTSQHNMIRNTENPKWPVSLTQNNARDMSSAHFDGRLFASNVDEGKLMQLCRVVEASESIHMNHAPRDNIITSNGKNNQEVKPSFREGDTGFSNVIKPSIQSLTFSTLENNRPTWEMKNIHESNAKPSLNMCLGNPSGNNSFPLSAGENIEGRLEGKVSPPFHQGPRSRPILPKLLKTGLTMNGETEKGSTSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMELRAGDTVTFSRIDPGGKLVIGFRKSSNSTDMQDASPPSHSNGLSAKGATFSGGADNLPSRSNCGDFLRSPKGNGELLLNGHPESPHLGTGAAGLLKTENCEMTNNNSLDQKISALEKKRTRNIGLKSKRLLIGNDDAMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGMKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSAPEELSSRELENLMKTSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLIDPTDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKDQIRKKDDDLNTNGGASRDDANPLEKEGGLNRSQTEVGESSAGKIDLNSDPNREDSQLDNIAKLRRELSERMNMNQNVGLRTINTEVQEGQQHSSLVTQSNGEDKRHLSDDRSIASIILNKERRDEVYNQSNESQNNMS*