Information report for Tp57577_TGAC_v2_mRNA1413
Gene Details
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Functional Annotation
- Refseq: XP_003598455.1 — putative B3 domain-containing protein At4g03170
- TrEMBL: A0A2K3LR19 — A0A2K3LR19_TRIPR; Ap2 b3-like transcriptional factor family protein
- STRING: AES68698 — (Medicago truncatula)
- STRING: AES68706 — (Medicago truncatula)
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g046253m
- Daucus carota: DCAR_003269
- Fragaria vesca: mrna23816.1-v1.0-hybrid, mrna17908.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_18863_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A06G0565, Gh_D06G0639
- Juglans regia: WALNUT_00008107-RA
- Manihot esculenta: Manes.03G176200.1.p, Manes.03G176000.1.p
- Populus trichocarpa: Potri.001G397100.1
- Prunus persica: Prupe.7G223900.1.p, Prupe.7G223800.1.p
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA1413|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA1413
ATGATACCTTGTACTTCATGTAACGGTTGGCAACAATTCGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAATACAAGGGTGAATCACACTTTGAGGTCTTAATCTTTGATGGAGAAAGTTTATGTGAGAAAACAGCTTCTTATTTTGTCGGAAAATGTGGACATGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGATACAAACACTTGTGCTGAAGAAGCCATTAATACTGCTTCGAATGGTAAGACTTGTAATGCTGGTGTTGAATTTGCTTCCCCCGAGAAATTAACGGCTGATGCACTCACTAAGACCACAACTATACAGTTTCCATTCCAACCAACCGGCAAAAGGGCCGAGAAACCTGTTAATGAAGTTACGCCTGTCCAGACTAAGAAACGAGGTAGACCACCAAAAGCAGGTAATTCTTATGAGAGAGCACATGATTTGGTGGCTTGTAACAAGGAACACTCAGGTATGGCGGGTTTTTAG ATGGTTGGAGTTGGAGGAACACAAATCTTTGGTGGAAGCAAATCATGGCAGGAAGATATTTATTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTCAGAACTGACTTTGAACAACATCTTGCACTTCCGAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCTGAAAATGCGACCCTTAAAGGTCCTAGTGGAGTGGTGTGGAATATAGGGCTGAAAACTAAAGATGATACTGTTTACTTCACTAATGGTTGGAAACAATTCTTGAAAGATCACTCTTTGAAAGAGAGTGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAAGTCTTAATCTTTGATGGAGAAAGCTTATGTGAGAAGGCATCTTCTTATTTTGTCGGAAAATGTGGACATCCTCAAACTGAACAAGGGGATAACAAGGCAAAGGAAACAAACAATTCTCTTGGAGAAATCAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTCACCTGAGAAATTTCGGCGTGTTAACAGTATACGAACACCATTACCTGTACCTTTTGAAACTACCAATGGAGAGACTTTTAATGCTGGTGTTGAATCTGCTTCCCCTGAGAAATTGATGGCTGATGCACTCACTAAGACCACAACTATACAGTTTCCCTTCCAACCAACTGGCAAAAGGACCAAGAAGCCTGTTAATGAAGTTACGCCTACGCCTGTCCAGACTAAGAAGCGAGGGAGGAGACCATTCAAAGCAGCTCATTCTTGTGATTTGGTGGCTTGTAACAAGGAACACTCAGAAACATCTAACCTGAATAGAAGTGGTAAGGAAGATGACCATTATATTCCTAGCGGCGGAGCTTCACTTTCAAGGTCATCAATATTTCATGAGAAAAAGATAGCTCAGTCATTTACCTCCACTTTTCCATATTTTGTTAAAATAATGAAATCATTTAATGTCGGCGGTTCACGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTCAATGTCGGCGGTTCACGTATTCTGGTGAGTTATTCCATTTTAATGTACCGTCAAAATTTTCGAAAGTACATCTTCCAAACACCAAGATACAGATTACTCTTCATAATTTGAAGGGAGAACAATGGACTGTTAATGCTGTTCCAACAACTAAATTGCATTCAAGTCACACTATGTGTGGAGGATGGTTGGATTTTGTTCGTGGCAATGACATAAAGCTTGGAGATGTCTGCATTTTCGAACTGATAGGTAAGTGTGAGTTACGTGTTCGTATCGCTGAGGTCGGAAAAGATGGGCTAGAAGACTCCCAGATTGGAAAACAAGCTTCTAGTACGCTTGGTGCAAGACATGATGTCGTTCGCAATAAGACTTCGAGTTCGAGATATAAGCCAAAGAGTTCTAAATTCAGCTCAAAGTACAGAAAGAAAGTTGTTGCATCAGATAAAAAGTTGTCAAAGATTGGTCAAGAAGCTGTTTTGTCCATTGAGTTGAAAAAATCTGATGTTGGAAAGGAAGGTCTTGACAATCAAAATGGGCATATGAATGAGCCTTAG ATGAATCGAAGTTCTAAGATGAAAGGAAAAGTCTATGACTTTTACCCTATGGACTTCAATCGTGATGAACATGAAGTAGCTGACATTCTTCTTCATATGCCAATGCTACATATAGTAATTGAGAAGAGGAAAAATGTGAAAATTACTCTCGGCGGAAAACGGATTTCAAAAATTCGTGAAGAAATCGATAACAACAATAATGTTCATGCAATGCTGCAAAACAATATTCCTGATGTTGTTATGGAAAACAATGTTGTTCATGCAATGCCCCAAATCAATATTCCTGATGTTCGTGCAATGCCGCAAATCAATATTCTTGATGTTGTTATGGAAAATGTAAACAACACATTAGATATACCGATGATTCCTGGCGTACCGAATAATAATATTTTTCAATGCTGCAAGCCTTTTGAGAAAAAACTATCGAATAGTGATTTGAGGGTGGATTATAATAGATTGTTTATGACCAAGAGTCACGTGGAAGACTATTTCTTGCCCTTTTTGAGAGAATGTGAAGAAAACATTGAAGATGGAATACACGTAGTTGCATATGACATGCAAGGCAGAACGTTCAACATGACGTTCAAAATTTGGACTAAAAAGTTTTATGTCCTCACCGGATCTGGGTGGAAGAATTTCTTTAAACAACATTCTTTGCGAGCAAATCAAGATCATGTTAAAGTGTGGATGTTTCGTCATTCACAAACCAATAAGATATGTTTTGCTCTTAGCATAAGAAGAGAGTGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA1413|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA1413
MNRSSKMKGKVYDFYPMDFNRDEHEVADILLHMPMLHIVIEKRKNVKITLGGKRISKIREEIDNNNNVHAMLQNNIPDVVMENNVVHAMPQINIPDVRAMPQINILDVVMENVNNTLDIPMIPGVPNNNIFQCCKPFEKKLSNSDLRVDYNRLFMTKSHVEDYFLPFLRECEENIEDGIHVVAYDMQGRTFNMTFKIWTKKFYVLTGSGWKNFFKQHSLRANQDHVKVWMFRHSQTNKICFALSIRRE*