Information report for Tp57577_TGAC_v2_mRNA11528
Gene Details
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Functional Annotation
- Refseq: XP_024630376.1 — B3 domain-containing protein REM16
- TrEMBL: A0A072U9K2 — A0A072U9K2_MEDTR; B3 DNA-binding domain protein
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_004498233.1
- Fragaria vesca: mrna29444.1-v1.0-hybrid
- Glycine max: Glyma.20G108000.1.p
- Juglans regia: WALNUT_00005007-RA, WALNUT_00011203-RA
- Lotus japonicus: Lj0g3v0114559.1, Lj0g3v0340729.1
- Medicago truncatula: Medtr6g061070.1, Medtr1g035490.1, Medtr1g035520.1, Medtr1g035570.1, Medtr1g035620.1, Medtr1g035640.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA11528|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA11528
ATGAAAGTGTTAGAAGTTGAAGTGAATGATGATAGAGATAAGAGTGAAACATTTAAGCAAGCTCAAAGGATAAAAGTTAATGGTAAGAGAAAAGTTCATATGGATTTTGAGACACCTGAGGAGAAATTTTTAAGTGCTAACAAAGGAAGCATGACTAAGAAGGCTAAAAAATGCCCAACAACATCTAATGAGAATCCATGTTTTGAACTCAAATTGACACCATCTTACATCCAAGGCAATACATTGAAAATACCAAGTGAGTTTTCAAGAAAATACTTAAGCAACTTCAAAGGGACTGCAACCATAAGAGTTGGTGAGGACATTCCAATAGAATTGAAGATGTCATTTGATAAAATTGATAGAAGATCTATTGTGACTTGTGGTTGGAAGTCATTTAGCCAAAAATATAACTTGCAAGTTGGTGATGTATGTAAGTTTGAGATGACTCGATCCAAACCATTTTCATTTACTATTACTATTACTCGAGCAAGAGAGAAACCAAACCCTAAGAAGTTGCAAGATTCAGAAGGTCGTGATGTGATGAAACATGATACATTTCAAATTTGTGTGAATTTCTCGTATCCGTATATACCAAACACTTTTTTGGAAAGACATAGAGGATGTCATGGAAAATTTGTGGAGCTGAAAGTGGACGGAAAATCGTGGCTTGTAAAAGTGAATAATTATTGCAAACGCGGCAGTAGATTATGTTTTGGTTGGACAAAATTTATGAAAGATTGCAAATTGAAGATCGGAGATAGTTGTCACTTTGAGTTGATTGATGAAGAAAAATTTGTGTTTAAAGTTACATTTAAGCTAGCTTCAATGTCCATTCACCATGGCCGTGGCAGTGAAGCTAAGGGAATTCATTTCTATCAGACTATTCAACTTCGTCAGTTGCAAGACCAACAACTTATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTCTGTGTGTAAAATGTTTTGGGTGCAATTGGGTGATGATATTTGGCTTCAGGATTGGAAAAGGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCTGATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTATGATTTGCAACGATGAACAAGAAGATAAAGAGAGTGATGATGATGATGATGATGGCTATGCTGAGATTACAAATGATTGTGACAATACCAAACAATCTCTCAAGAAAAAGAAAATCAACTCAAACGATAGTGCTACTACTTTTGCTACACCTCAAGTGAAAAAGATTCACAAGAGAAAAATTAACATGAAGGCAACCCAGCAAAAAATCTCAGAGGCTAATGGAAAGATAGGAGGCAGCGGTAAGAAAGCTACGGAATCCTCAAAAACTGTAGATGCAAATAAGAGAAGGTGCACCAATTCTCATCATCCTGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTGTGTGGAAGGTCATAAATTAAGATTGACGATACCTAGTTGGTTTTCGAAAGAGTACATGAATGAGTTATTGCAAGGGAATGCAACGATTAGAAGTGTTAGTGATGAAAAGACATGGCACGTGACATTAAGCTTTGATGAACGCAATAGAAATTTTAAAATGGGAGGTGGTTGGAGATCATTTTCACGAGAACATAACTTGCAAGTCGGTGATGAATGTAAATTTGAGATGACTGAACGAGAACCTCTATCATTCACAATTACTATTGTTCAAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACATCGCCAGCAGTAGATATGGATAATGTGGGCAATTTTGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGATTATGAAAGTCCGAATTTACATAATAAATTCAAGGTCTCTGTAACAACATTAGACAAGCTGATCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATGAAGATCTTGATTATGGGGGCTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGAAGATTGGAGACACTTGTTTTTTTGAGATGATTGATTTACAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA11528|Trifolium_pratense|B3|Tp57577_TGAC_v2_mRNA11528
MKVLEVEVNDDRDKSETFKQAQRIKVNGKRKVHMDFETPEEKFLSANKGSMTKKAKKCPTTSNENPCFELKLTPSYIQGNTLKIPSEFSRKYLSNFKGTATIRVGEDIPIELKMSFDKIDRRSIVTCGWKSFSQKYNLQVGDVCKFEMTRSKPFSFTITITRAREKPNPKKLQDSEGRDVMKHDTFQICVNFSYPYIPNTFLERHRGCHGKFVELKVDGKSWLVKVNNYCKRGSRLCFGWTKFMKDCKLKIGDSCHFELIDEEKFVFKVTFKLASMSIHHGRGSEAKGIHFYQTIQLRQLQDQQLMVPRNFVERYWKDVSNPISLRLPNESVCKMFWVQLGDDIWLQDWKRFARSLRCGDLLVFQYKGGSDFHVIIFDDSKLEIDYSSMICNDEQEDKESDDDDDDGYAEITNDCDNTKQSLKKKKINSNDSATTFATPQVKKIHKRKINMKATQQKISEANGKIGGSGKKATESSKTVDANKRRCTNSHHPDENPNFTLKLSRSCVEGHKLRLTIPSWFSKEYMNELLQGNATIRSVSDEKTWHVTLSFDERNRNFKMGGGWRSFSREHNLQVGDECKFEMTEREPLSFTITIVQATKEPCPEQFQENQRVKEKSETSPAVDMDNVGNFGEGISRSCPKTHDYESPNLHNKFKVSVTTLDKLIIPSEFLKRHNISNGNSVELKVGEGTWFVEVSYNEDLDYGGFTKGWKEFVRECKVKIGDTCFFEMIDLQNHVFKVSIILDV*