Gene Details:

  • Gene ID: Tp3g17090
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Thellungiella parvula
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_006406545.1  — B3 domain-containing transcription factor VRN1
  • Swissprot:  Q8L3W1  — VRN1_ARATH; B3 domain-containing transcription factor VRN1
  • TrEMBL:  E4MXM2  — E4MXM2_EUTHA; mRNA, clone: RTFL01-34-E14
  • TrEMBL:  V4M6R9  — V4M6R9_EUTSA; Uncharacterized protein
  • STRING:  Bostr.19424s0762.1.p  — (Boechera stricta)

Gene Ontology:

  • GO:0009909  — Biological Process — regulation of flower development
  • GO:0010048  — Biological Process — vernalization response
  • GO:0005654  — Cellular Component — nucleoplasm
  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Tp3g17090|Thellungiella_parvula|B3|Tp3g17090
    ATGCCACGCCCTTTCTTCCACAAGCTGATTTTCTCATCCACTATCCAAGAAAAGCGTCTGAGAGTTCCAGATAAGTTTGTGAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGTTTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGAGTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATACGAAGGAAACTCTGCCTTTAGTGTCTACATTTTCAATTTATCTCATTCCGAGATCAATTACCATTCCACCGGTCTCATGGATTCTGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGAAGATGAAGATGCCGAGGTCATTTATCCTTCTTCCGTGTACCCATCACCACTTCCTGAATTGGCTCTACCTGCCAATAAAGGGTATACTGGTTCAGCCATCCAGAGCTTGTTCACTGGACCTGTTAAAGCTGAAGAGACAACACCAACCCCAAAAATTCCGAAAAAGCGAGGGAGGAAGAAGAAAAACGCTGATCCTGAGGAAATAAACTCATCTGCTCCGCGGGATGATGACCCAGATAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCAAGAAAGAGAACCGTGACTGCAGAAGAGAGAGAGAGGGCCATCAATGCAGCCAAAACGTTCGAGCCTACAAACCCTTTCTTCAGAGTTGTTCTGCGGCCATCCTATCTATACAGAGGTTGCATCATGTATTTACCTTCTGGATTTGCTGAGAAGTATTTAAGTGGGATCTCCGGATTCATTAAGGTCCAGCTCGCGGAGAAACAATGGCCCGTGAGGTGCCTCTACAAAGCAGGGAGAGCCAAATTCAGCCAAGGGTGGTATGAGTTCACTCTGGAGAACAACCTAGGAGAAGGAGACGTCTGCGTGTTCGAGCTGCTAAGAACCAGAGATTTCGTTCTGAAAGTGACGGCCTTTCGAGTCAACGAGTACGTCTGA
Protein Sequence:
  • >Tp3g17090|Thellungiella_parvula|B3|Tp3g17090
    MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIYPSSVYPSPLPELALPANKGYTGSAIQSLFTGPVKAEETTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPDNRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNEYV