Information report for Thhalv10024481m
Gene Details
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Functional Annotation
- Refseq: XP_006412526.1 — B3 domain-containing transcription repressor VAL2 isoform X1
- Swissprot: Q5CCK4 — VAL2_ARATH; B3 domain-containing transcription repressor VAL2
- TrEMBL: V4MC55 — V4MC55_EUTSA; Uncharacterized protein
- STRING: XP_006412526.1 — (Eutrema salsugineum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT4G32010.1
- Brassica napus: GSBRNA2T00099832001, GSBRNA2T00077769001
- Brassica oleracea: XP_013599014.1, XP_013599015.1, XP_013592945.1
- Brassica rapa: XP_009138059.1, XP_009138058.1, XP_009138060.1
- Raphanus raphanistrum: RrC320_p2
- Ricinus communis: 29915.m000469
Sequences
CDS Sequence:
- >Thhalv10024481m|Eutrema_salsugineum|B3|Thhalv10024481m
ATGGAGTCAACGAAGGTTTGCATGAACGCACAGTGTGGAGCGGCCTCGACGTCCGGCGAGTGGAAGAGAGGCTGGCCGATGCGATCCGGCGAGTTAGCCTCTCTCTGCGACAAGTGTGGTTCTGCATACGAGCAATCCATTTTCTGCCAAGTGTTCCACGCCGAGGAATCTGGTTGGAGAGAATGTAATTCATGTGACAAGCGTCTTCACTGTGGATGCATCGCTTCAAGATTCATGATGGAGCTTCTAGATAACGGCGGCGTTTCCTGTATAAGCTGTGCCAAGAAATCCGGATTTTTCTCTATGAATGTCAACCACGAAGCCAATGGTAGAGGCTTCCCTTCGTTTGCTTCACCAGAGCATGGGACAAATCTCAAGCACTTGCTTCACTTTCAAAGAATCGGCTCCACTCAGTCTTTTTTCCAAATGAAGCAAGAAGACTCCCTGCTTCCTGCTCTAAGACACAAAACTGAAAAGCAAGAATTGTCTGCGCAGCCAAACTTGAGCATTTCGCTTGGATTTACGAGTCCGTTTCATGATGCTGTTGTTGATGACACAAGTAAGGCTACTCCGATTTTTCAACTGGCCCCTCGGTCCAGGCAACTGCTTCCAAAACCTGCAAACTCAGCTCCCACTTCTGCTGGCATGGAGCCTAATGGGAGCCTCGTTTCACAGATTCATGTCGCTCGTCCTCCTCCAGAAGGTCGCGGAAAGACCCAGTTGCTTCCCCGTTATTGGCCTAGGATTACTGACCAGGAGCTCCAACAATTATCTGGACAGTATCCTCATCTCTCAAATTCAAAAATCATACCGCTCTTTGAAAAAGTCCTGAGTGCAAGCGATGCTGGTCGTATCGGTCGACTGGTTCTTCCCAAAGCATGTGCAGAGGCATATTTCCCTCCAATCTCTCAACCTGAGGGCCTCCCGTTAAAGATACAAGACATCAAAGGGAAAGAATGGGTGTTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTGGAGGGTGTGACTCCTTGCATACAATCCATGCAGTTGCAAGCTGGTGATACTGTGACGTTTAGCCGCACGGAACCTGAAGGAAAACTCGTGATGGGATACCGTAAAGCGACAAACTCTACAGCAGCACAGATGTTCAAGGGAAGCAGTGAACCCAATCTTAGCATGTTTAACAACAACTTGAGCCCGGGGTGTGGTGATATCAACTGGTCTAAACTTGAGAAGCCTGAGGACATGGCAAAGGATAACTTATTGCTTCAGCCGTCACTAACTTCTGCTAGGAAACGTGTTCGGAACATTGGCAATAAGAGCAAGCGACTGCTCATTGACAGCGTAGATGCTCTAGACCTGAGAGTAACTTGGGAGGAGACACAGGATCTTCTGCGGCCGCCTCAATCCGTTAAACCGAGCATCTGTACGGTGGAAGATTACGATTTTGAAGAGTATGATGAACCACCAGTTTTTGGGAAGAGGACCGTTTTTGTGTCACGTCAAACAGGGGAACAAGAGCAATGGGTTCAGTGTGATGCTTGTGGGAAATGGCGACGGCTGCCTGTGGATACTCTTCTTCCACCAAAGTGGTTGTGCTCCGATAATGTCTTGGATCCTGGCAGGTCATCATGTTCTGCACCTGACGAACTCTCTCCAAGAGAACAGGATACACTTATCCGGCTGAGCAAAGAGTTCAAAAGGAGGAGACTGGCATCATCAAACGAAAAGCTAAACCAGGAGCAGGAGGCATCTGCTCTGGATACTTTAGCAAACGCAGCCATCACCACGACAGGTGGACAAGGGGATACAGCGGTTGCAGCCACGACCAAGCATCCAAGACACCGGGCAGGTTGTTCTTGCATCGTCTGCAGCCAGCCGCCGAGTGGGAAAGGCAAACACAAGCCTTCGTGCACTTGCACTGTGTGCGAGGCAGTGAAGAGGCGGTTCAAGACGCTGATGATGCGGAAGCGGAACAGAGAAGAAGCAGGGCAGGCAAGCCAGCAGGCGCAGTCAGAGTGCAGGGACGAGACAGAAGTGGAGAGCATTCCAGCGGTTGAAGCAGCCGCAGGTGGAAACATTGACTTAAACACAGACCCTGGGGCTTCTCGAGTGAGCATGATGAGCCTTCTCCAAGCTGCAACCTTTCCTCTGGAGTCATATCTGAAACTAAAGGCTATTATTCCCAATACAGCAGCAGAACAGCAAAGCAGTGATATGGTAAGCACAGAGCACGGTTCGTCCTCAGCTGCACAAGAACATGACAGAGACACAAGCGGAGCTCCTGAGTCCCTGAACTAA
Protein Sequence:
- >Thhalv10024481m|Eutrema_salsugineum|B3|Thhalv10024481m
MESTKVCMNAQCGAASTSGEWKRGWPMRSGELASLCDKCGSAYEQSIFCQVFHAEESGWRECNSCDKRLHCGCIASRFMMELLDNGGVSCISCAKKSGFFSMNVNHEANGRGFPSFASPEHGTNLKHLLHFQRIGSTQSFFQMKQEDSLLPALRHKTEKQELSAQPNLSISLGFTSPFHDAVVDDTSKATPIFQLAPRSRQLLPKPANSAPTSAGMEPNGSLVSQIHVARPPPEGRGKTQLLPRYWPRITDQELQQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRTEPEGKLVMGYRKATNSTAAQMFKGSSEPNLSMFNNNLSPGCGDINWSKLEKPEDMAKDNLLLQPSLTSARKRVRNIGNKSKRLLIDSVDALDLRVTWEETQDLLRPPQSVKPSICTVEDYDFEEYDEPPVFGKRTVFVSRQTGEQEQWVQCDACGKWRRLPVDTLLPPKWLCSDNVLDPGRSSCSAPDELSPREQDTLIRLSKEFKRRRLASSNEKLNQEQEASALDTLANAAITTTGGQGDTAVAATTKHPRHRAGCSCIVCSQPPSGKGKHKPSCTCTVCEAVKRRFKTLMMRKRNREEAGQASQQAQSECRDETEVESIPAVEAAAGGNIDLNTDPGASRVSMMSLLQAATFPLESYLKLKAIIPNTAAEQQSSDMVSTEHGSSSAAQEHDRDTSGAPESLN*