Information report for Thhalv10016263m
Gene Details
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Functional Annotation
- Refseq: XP_006410148.1 — B3 domain-containing transcription repressor VAL1
- Swissprot: Q8W4L5 — VAL1_ARATH; B3 domain-containing transcription repressor VAL1
- TrEMBL: V4NXH2 — V4NXH2_EUTSA; Uncharacterized protein
- STRING: XP_006410148.1 — (Eutrema salsugineum)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0005739 — Cellular Component — mitochondrion
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G30470.1, AT2G30470
- Brassica napus: GSBRNA2T00142144001, GSBRNA2T00113430001, GSBRNA2T00048551001, GSBRNA2T00024513001, GSBRNA2T00105140001
- Brassica oleracea: XP_013630357.1, XP_013636700.1, XP_013636699.1, XP_013636698.1, XP_013633557.1
- Brassica rapa: XP_009132737.1, XP_009144302.1, XP_009141065.1
- Raphanus raphanistrum: RrC4353_p1
Sequences
CDS Sequence:
- >Thhalv10016263m|Eutrema_salsugineum|B3|Thhalv10016263m
ATGTTTGAAGTCAAAATGGGGTCAAAGATGTGCATGAACGCATCCTGTGGCTCGACCTCTACTGTTGAATGGAAGAAAGGTTGGCCTCTTCGATCCGGTGCTCTCGCTGATCTCTGTTATCGTTGCGGATCCGCTTATGAGAGTTCTCTTTTCTGCGAAACATTCCATATGGACCAATCTGGTTGGAGGGAATGCTATTTGTGCAGCAAGCGACTTCATTGTGGATGCATTGCTTCTAAGCTCATGGTCGAGCTTATGGACTATGGTGGTGTTGGTTGTACTACTTGTGCTAGCTGCCATCAACTCAATTTGAATAAGAGAAGTGAGAATCCAGGTCTATTTAGCAGATTACCATTGAAGACGTTAGCAGAGAGGCAACATATAAATGGGGAAAGTGGAATGAGTATTGACGGAGGAAGAAACGAAGCTGATCTCTTTTCTCAGTCCCAAAGATGCGACTCTCAGCCACTAGTCCCGGGGGTAGATAAAAGAGAAGACTTCATGCCTCCTCACCGTGGCTTTGGTATTCTGAAGTCAGAAAACTCCACTGGGTATAGGCTGGACGCTGGGGAAATGCATGAATCGTCGCCTTTGCAGCCATCTTTGAATATGGCTTTGGCAGTACATCCTTATAGTCCATCTTTTGCTTCAACCCCTGTCGAGGGAAAGAAACACATCGGTCCTTCTCAGTCCCACATTGTTCAATGCTCTGCGTCTAGTATACTGCAGAAACCCTCGAAATCTGTCCTTGGAACTCCTCCTGGAACTAGTAAATCTGCTCAGGCTCGCATTGGGAGGCCTCCTGTGGAAGGGAGAGGGAAAGGCCATTTACTTCCTCGGTATTGGCCCAAGTATACTGATAAAGAGGTTCAACAGATCTCCGGAAATTTGAATTTGAACATTGTACCTCTTTTTGAGAAAACTCTTAGTGCCAGTGATGCTGGTCGCATTGGTCGTCTAGTTCTTCCAAAAGCCTGTGCAGAGGCATATTTTCCTCCCATTAGTCAATCGGAAGGGATACCTTTGAAAATCCAAGATGTGAGGGGTAAGGAGTGGACTTTCCAGTTCAGATTCTGGCCCAATAACAACAGTAGAATGTATGTCTTAGAAGGTGTCACTCCCTGCATACAGTCCATGATGCTACTTGCCGGTGATACAGTAACATTCAGTCGGGTTGATCCTGGTGGCAAACTAATCATGGGTTCAAGGAAGGCAGCTCATAATACCGGAGACATGCAGGGCTATGGTCTCACCAATGGTACTTCAAACGAGGACACATCATCGTCTGGTGTTACAGAGAACCCGTCCTCTATAAATGCTTCCTCGTGTCCCTCACAAATACCAGAAGAATTGAAAGGTCTGCCTGAGAATTTGAACGGTGGTAGTTGCTCGAAGAAGAGTGAGATTAATGGAGGCACGATGTGTGATGATCCACCACGTCCTAAGGACAAGAAGAGGACTCGAACCATTGGGGCGAAAAACAAGAGACTGCTTTTGCATAGTGAAGAATCTATGGAGCTGAGACTCACATGGGAAGAAGCTCAGGACTTGCTTCGTCCCGCTCCTAGTGCAAAGCCTACCATTGTCGTCATCGAGGAGCATGAATTTGAAGAATTTGACGAACCTCCTGTATTTGGAAAGAGGACGATAATTACTTCAAGACCTTCAGGTGAACAAGAACGATGGGCATCTTGCGACGACTGCTCTAAATGGAGAAGGTTACCTGTAGACGCTCTTCTTTCCGTAAAGTGGACTTGTTCAGACAACGTTTGGGACGTAAGCAGGTGTTCATGTTCTGCACCGGAGGAAAGTCTGAAGGAACTTGAGAATGTTCTTAGAGCAGGGAAAGATTGCAAGAAGAGAAGAATTGGGGTAAGCCAGACAGCAAAAACTGGGCAAGAACCGTCTGGTCTGGATGCACTAGCGAGTGCAGCAGTCTTAGGAGACGCTTTAGGCGAGCCAGAGGTTGCGACCACGACCAGGCATCCAAGGCACAGGGTTGGATGCTCTTGCATTGTGTGCATTCAGCCGCCAAGTGGGAAAGGTAGGCACAAGCCCAACTGTGGCTGCAACGTGTGCAGCACAGTGAGGAGAAGGTTCAAAACACTGATGATGAGGAGGAAGAAGAAGCAGTTAGAGCGCGACGGACCAGCAGCAGCAGCAGCAGAAGACCAGGAGAACGCGGAAGCGAAACAGGGCGACTCTGATAAGAGTAAGGCAGAGGAGGAAGTGAAAACAGGGAGGATAGATCTGAACAGTGATCCATATAACAGAGAAGACATTGAAGCTGTGGCGGTGGAGAAAGAAGGGAGTGAAGGAAGAGAAGTAGGGCAGTGTTCAGGCGTGGCTCAAGGCGGTGATGTTTTAGGAGTAACAGAGTTAGTAGGAGAAGCTGAGAAAATCAGTGAAGAGCCGAAAGGTTCAAGCTGA
Protein Sequence:
- >Thhalv10016263m|Eutrema_salsugineum|B3|Thhalv10016263m
MFEVKMGSKMCMNASCGSTSTVEWKKGWPLRSGALADLCYRCGSAYESSLFCETFHMDQSGWRECYLCSKRLHCGCIASKLMVELMDYGGVGCTTCASCHQLNLNKRSENPGLFSRLPLKTLAERQHINGESGMSIDGGRNEADLFSQSQRCDSQPLVPGVDKREDFMPPHRGFGILKSENSTGYRLDAGEMHESSPLQPSLNMALAVHPYSPSFASTPVEGKKHIGPSQSHIVQCSASSILQKPSKSVLGTPPGTSKSAQARIGRPPVEGRGKGHLLPRYWPKYTDKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGKEWTFQFRFWPNNNSRMYVLEGVTPCIQSMMLLAGDTVTFSRVDPGGKLIMGSRKAAHNTGDMQGYGLTNGTSNEDTSSSGVTENPSSINASSCPSQIPEELKGLPENLNGGSCSKKSEINGGTMCDDPPRPKDKKRTRTIGAKNKRLLLHSEESMELRLTWEEAQDLLRPAPSAKPTIVVIEEHEFEEFDEPPVFGKRTIITSRPSGEQERWASCDDCSKWRRLPVDALLSVKWTCSDNVWDVSRCSCSAPEESLKELENVLRAGKDCKKRRIGVSQTAKTGQEPSGLDALASAAVLGDALGEPEVATTTRHPRHRVGCSCIVCIQPPSGKGRHKPNCGCNVCSTVRRRFKTLMMRRKKKQLERDGPAAAAAEDQENAEAKQGDSDKSKAEEEVKTGRIDLNSDPYNREDIEAVAVEKEGSEGREVGQCSGVAQGGDVLGVTELVGEAEKISEEPKGSS*