Information report for Thhalv10000028m
Gene Details
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Functional Annotation
- Refseq: XP_024014112.1 — B3 domain-containing protein REM13
- Swissprot: P0CAP5 — REM13_ARATH; B3 domain-containing protein REM13
- TrEMBL: V4NJI6 — V4NJI6_EUTSA; Uncharacterized protein
- STRING: XP_006405008.1 — (Eutrema salsugineum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G24650.1
- Brassica napus: GSBRNA2T00057300001, GSBRNA2T00138754001, GSBRNA2T00015923001, GSBRNA2T00127304001
- Brassica oleracea: XP_013604125.1, XP_013604126.1, XP_013604127.1, XP_013624031.1
- Brassica rapa: XP_009117116.1, XP_009133979.1, XP_009117105.1
Sequences
CDS Sequence:
- >Thhalv10000028m|Eutrema_salsugineum|B3|Thhalv10000028m
ATGATTCCTGTAGACTTCTTCTCTATGTATGTTGAAGGAAAGAGGAGTGTGGAGAAGACGACGGCTGAGCTGAAATCTGACTCGTCGGACATAACCTGGAGAGCGAAGATGACTGGTCGGAGACTCAGTGACGGCTGGGAAGAGTTTGCCGTCGCTAATAACTTTCGAACCGGCGACGTCGTCCTTGTCAGATATGAAGGAGATTTGGTCTTTCATGTTTCGGATTTAGGACCAAATTGCTGTGACGTAACGTTTCCAAGTAACAAGGATCAGAACAACAACAACTGTGACTTTTTATTGAAAAAGCATAAGCATCCAAGAACAGATGTTGGTGATGATGAAGAGGTTCCTAAGAAGAAGAAAGTCAAGAAGAAGAATAGTGTTGATGAAACAGAAGCGGATTCTTCTTCATTAGACAACTCTTGTTTTGTGGCCAATGTCACGGCTTCGAATCTATGCACAGATACACTGTATCTTCCACAACATTTCACAAGCTCAAATGGCATTACAATAAAATGCCGCAAGATTGTTTTAATAGATGGAGGGGAAAGATCATGGGCATTGGATCTGATGTTGGACGAAACATCTGATACTTTTTACATAAGCCGAGGTTGGAGACGTTTCTGTGAAGAAAACGGTAAAAAAGCAGGAGGCTTCTTTACGTTTAAACTAGTGGGGAACGGGGAAACTCCTGTGCTCAGTTTCTCCCCTACAGAATCTATCGATAATAGAAGGCCTAGAGACTGTTCTGAAGCTACCGGCAGAGTATCTCTTTCCACAGAACTTAGTAACAAGGAAGCGGACATAGAAGGGGAGAGGAATGAAGACGAGTGCAGAATACTGGAGACAGAAAAGAAGAAACGGAGAGTTTTATCATATGCATCATATTCACCATGTCGTAAGCGATTCGTAACATTTACACTTCCACCTGATTATGACAGAATTCGTAGATTGACTCTTCCAAAGCCATTCGTGATGGAGAATGGCATCAACAAGGGTGGGGAGATATATCTGTTGGGTAAAGATGGTAGAAAGTGGCCAACAAGCCTTCTGCTGGACAAGACAGGACAAATGAGGTGGAGAAAGGGTTGGAAAGAATTTGTTAAAGGAAATGGCTTAGAGTCAGGCTTCACGCTCAAGTTGATATGGGAAGGCACAACTCCTGTGTTTAGTTTGTGCTCTGCAGAATCCGCCAGTGACAGAGAGGAAAAAGAGTTTTCAAAAGCTGTCGAGAAACAGTCTATTTTCAAAGATCCTAGCAAAAAAGATAAGATCGGAAAAGATGAGAATAAGAAAGAGGAGAGGAGGTCAATGGAGAGAGGGAAGGATCATCTGAGAGGGAGGAATTCAACTGCATCGAGCCAAGATCAATTTTTGTCATTTACAATTACACCTTATAGTGTTGAAAAGTGTATACTGCCTCTTCCAAGGAAATTCACGAGAGAGAATGGCATCAACAAGCCTAGGATGATTACTCTTCTGGGCAAAGACGGTATAAAGCAGCAGACGAAATTGCTATTCAGCAAAGGAAAAAAAGCGGCTTTGGGAAACGGATGGAAATCTTTTGTTAAAGCAAACGGCTTAAAGATTGGCGACTCTTTCACGCTCAAGTTGATTTGGGAAGAAACAACTCCTATGCTCAGCTTGTGCCATGGAGAATGTAGCATTGACCGAGGAGAATCTTCAGAAACAGACCAGAAAAATTCTCTTCCCATAGAACCTAGTAGCTGTGAGAAATTAAGCAAAGACGAGAACAGTAAAGTGGAAAACAAGGAGACCATGTCAATGGAGAGAGAGAAGAATCATCTGAGAGGAAGGGAGTCAACTCCATCGAGCCAAAAACAATCTGTGACATTAACAATGACACCTTATAGTGTCAAAAAGTGTATACTGCGTCTTCCAAAGGCTTTCACGAGGGAGAATGACATCAACAAGCATGCGATGATTATTCTGTTAGGGAAAGATGGCATTAAACATCAGACGAAATTGCTGTGGGACAAAGGAACAGGAATAATGACTCTGGGAAAAGGCTGGATGGATTTTGCTAAAGCAAACGGGTTAAAGACTGGCAACTCCTTCACGCTCAAGTTGACATGGGAAGACACAACTCCTGTGCTCAGCTTGTGCCATGCGGAATGTAGCATGGACAGAGGATCAGGAGGAGAATGTTCAGAAACAGACCAGAAAAAGTCTCTTCCCATAGAACCTAGCAGCTGTGAGAAAATAAGCAAAGACGAGAACAGTAAAGAGAAAAACAACAATGAGGCAAATAAGAAAGAGGAGACCATGTCAATGGAAAGAGAGAAGAATCATCTGAGAGGGAGGGATTCAACTCCATCGACCCAAAAACAACTAATGACATTAACAATTACACCTTCCAGTTACTCAAAGTGTAAACTGGTAAGTTTATCAAACAACTCTTGTTTCAGAATTCAGATGATTAGTTTTTTCTCTTGTACTCTTATTGGTATTATACGTATACTTCTTTCAAATCTTTTCCAGACTCTTCCAGCACAATTTGCGAGAGAGAATAGCTTGAACAAGCCTGGAATGATAGATCTGTTGGGAAAAGATGGTAAAAAGTGGATGGTAAATCTTGTACAGGATGGAGACGGAAGAATGAATTTGGGAAACGACTGGAAAGAATTTGCTAAAGCAAACGACTTAAAAACAGGCGAGTCTTTCAAGATGGAGTTAATATCAGAAGACGGAACTCGTATGCTCAAATTGGTCCATTCAAACCCTAACAGTTCAAAAGCCAACGAGAAAGAGTCGACAGAACCTAGAAGCAGAGATTCATCCTCAGCAATCCAAAACCGAACCTTGACATTAACACTCACACCTGAAGACGTCAGAGCCTGTATACTGCATCTTCCAAGTCAATTCATGAAGGCTAATGGCATCAACAAACTTGGAGAGATAACTATTTTAGGTGAAAACAAAGTGGAATGGTCTGCATATCTATTGTCCATCAGAGATGGAACTGTTGCTTTAGAAAATGGTTGGGATGAGTTTTGTAAAGCTAATGGCGTGAAGTTAGGAGAATCTTTCACTTTGGAGTTCGTTTATGAACTTAACACAAGCATTGTACTCAAGTTTTGTTCTCGGTAG
Protein Sequence:
- >Thhalv10000028m|Eutrema_salsugineum|B3|Thhalv10000028m
MIPVDFFSMYVEGKRSVEKTTAELKSDSSDITWRAKMTGRRLSDGWEEFAVANNFRTGDVVLVRYEGDLVFHVSDLGPNCCDVTFPSNKDQNNNNCDFLLKKHKHPRTDVGDDEEVPKKKKVKKKNSVDETEADSSSLDNSCFVANVTASNLCTDTLYLPQHFTSSNGITIKCRKIVLIDGGERSWALDLMLDETSDTFYISRGWRRFCEENGKKAGGFFTFKLVGNGETPVLSFSPTESIDNRRPRDCSEATGRVSLSTELSNKEADIEGERNEDECRILETEKKKRRVLSYASYSPCRKRFVTFTLPPDYDRIRRLTLPKPFVMENGINKGGEIYLLGKDGRKWPTSLLLDKTGQMRWRKGWKEFVKGNGLESGFTLKLIWEGTTPVFSLCSAESASDREEKEFSKAVEKQSIFKDPSKKDKIGKDENKKEERRSMERGKDHLRGRNSTASSQDQFLSFTITPYSVEKCILPLPRKFTRENGINKPRMITLLGKDGIKQQTKLLFSKGKKAALGNGWKSFVKANGLKIGDSFTLKLIWEETTPMLSLCHGECSIDRGESSETDQKNSLPIEPSSCEKLSKDENSKVENKETMSMEREKNHLRGRESTPSSQKQSVTLTMTPYSVKKCILRLPKAFTRENDINKHAMIILLGKDGIKHQTKLLWDKGTGIMTLGKGWMDFAKANGLKTGNSFTLKLTWEDTTPVLSLCHAECSMDRGSGGECSETDQKKSLPIEPSSCEKISKDENSKEKNNNEANKKEETMSMEREKNHLRGRDSTPSTQKQLMTLTITPSSYSKCKLVSLSNNSCFRIQMISFFSCTLIGIIRILLSNLFQTLPAQFARENSLNKPGMIDLLGKDGKKWMVNLVQDGDGRMNLGNDWKEFAKANDLKTGESFKMELISEDGTRMLKLVHSNPNSSKANEKESTEPRSRDSSSAIQNRTLTLTLTPEDVRACILHLPSQFMKANGINKLGEITILGENKVEWSAYLLSIRDGTVALENGWDEFCKANGVKLGESFTLEFVYELNTSIVLKFCSR*