Information report for Thhalv10000010m
Gene Details
|
|
Functional Annotation
- Refseq: XP_024014111.1 — B3 domain-containing protein REM-like 1 isoform X3
- Swissprot: Q8S8E8 — REML1_ARATH; B3 domain-containing protein REM-like 1
- TrEMBL: V4LVD4 — V4LVD4_EUTSA; Uncharacterized protein
- STRING: XP_006405009.1 — (Eutrema salsugineum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G24690.1, AT2G24650.1
- Brassica napus: GSBRNA2T00138754001, GSBRNA2T00015923001
- Brassica oleracea: XP_013628510.1
- Brassica rapa: XP_009133977.1, XP_009133950.1
- Raphanus raphanistrum: RrC3448_p1
Sequences
CDS Sequence:
- >Thhalv10000010m|Eutrema_salsugineum|B3|Thhalv10000010m
ATGGTGTTACATTTGTCAGATTTAGGACCGAGCAGCAACAATGATCAGGACAAGATGGGTTACATTTCAATGAAGAAGCATCAGCACCCAAGATCAGAAGACTATGGTGGTGATGATGACAACACCGAACTTGCGAGAAAGAAGAAAGCTAAGATGAACAAGTCAGAAGCAGAAGCTGATTCTTCTTCATCAGACCACTCTTGTTTTGTGGCCCTTGTCACGGCTTCTAATCTACACACAGATGCTCTGTATCTTCCAAAAGATTTCACAAGCTCAAATGTTCTTAAAAGGGAATGCCGCAAGATTGTTTTAACAGATGGAGGAGAAAGATCCTGGGCACTGGATCTGAGGTTCAACAAATCATGTGATAGTTTCTACATAACGCGAGGTTGGAGAAGTTTCTGTGAAGAAAATGGTAGAAAAGAAGGAGGCTTCTTTGTTTTCAAACTAGTTGGAAACAGTGAAACGCCTTTTCTCAGTTTCTGTTCCACTGAATCTTTCAATGATGGAACAAACAAGAACAGTAAAGAATCGTGTATGGAGTTGGAAAGAAAGAAGAATCATCTGAGATGTATAGATTCAACTTCACCAATCGAAAACCGATTCGTGACATTGACACTTCCACAGTGCAGCCTCAGAGACAGTAGAATTTTTATTCCATTGCCATTCCTGAGAGAAAATGACTTGGACAAACCTCGGTTGATAACTCTGTTGGGAAAAGATGGCACAAAGCAGGTGGCAGATCTTCGACGGGACGGAAGTGGAAGAATGAGATTGACAAAAGGCTGGAGAGAGTTTGCTAAAGCAAACGGCTTAAAGGCAGGCGAATCCTTCACGTTGGAGTCAATCTGGAAAGACAAAACTCCTATGCTCAGATTGGTCCATACAGATTCTAGCAGTGATGGAAGGCAACAAAGACAATGCTATTCAAAAGCTAGCGAGAAAGAGTCTGTTTCCACAGAGAGTAGAAGAGAAAAAGCAAGCAAGAAAGTGTCTCCTCTTAGCAGTGGTAAACAGATCAGCAAAGAGGAGAGAAAGAAGAATCATCTGAGATTTAGAGATTCACCTTCACCAAGCCAAAACCCATTTGTGACGTTAACAGTTACACATGACAGCCTCAGAAATTGTAGACTTCATCTTCCACTGTCTTTCATGAGAAAAAATGGCTTGGACAAATCTGGGATGATAACTCTGTTGGGTAAAGATGGTACAAAGTGGCCGGCAAATCTTCTACGAGAAAACGCCACAGGAAGAATGAGTTTGGGAAAGGGCTGGAAAGATTTTGCTATAGCAAACAGCGTAAAGGCGGGTGAATCCTTCACACTGAAGTCACTTTGGAAAGACAAAACTCCTATGCTTAGTTTGGTCCATACAGATTCTAGCAGTGATGGAAGGCAACAAGGACAATGCTATTCAAAAGCTAGCGAGAAAGAGTCTGTTTCCACAGAACCTAGCGGTGAGAACAAGACCCAAGGAGCCAAGAACAATAGAGAAGAGAAGAGACATTCATCTTCAGGAATCGGAAATCAGTTTGTGACATTAACACTCAAACCTGAAGATGTCAGAGACTGTAAACTAAACAAATCTTGGGCTTCTTATGAAGTACGTCGAATCCAACGCTTCCCTCATCGATCTCGTACTCACTGTCGGCTGAAAATAGTTCGCTGTGACGCTCATGATCTTCGAATCCGCAAAGTCGTCGTTTTCCTCAGACATGGAAGGAGATATGATGTTCCAGAGTTCACAAGAAAGAAGAAAACGAAGAAGAACAACCCAGAAACTGAAGCATTTTCTACATCAGACCACTCTTGTTTTGAAGCCCATGTCTCAGCTACGAATTGTTTGGACTTTCGTCTACAAGATTCCACAAGCTCAGATGCTATTAGAAAAAAATGTGACAAAAAGTATAGTTCGAGACGGATGGTAAAATCATATGAGTCAAGTGAGAAACGATTTGTAACATTTACACTTGCACCTGTCGATGTCAGACATTGTAGACTGCGTCTTCCAATGCAATTCTCCAGAGAGAATGGCATCAATAAGCCTGGCAAGATATATCTGTTGGGTAATGATGGTTCAAAGTGGCTGGCAAACCTTCTCCTGGAAAGCAGAGGAAGAATGACAGTGGGAGACGGCTGGAAATCATTTGTCAAGGCAAACGGCTTAAAGATCGGCGAATCCTACACACTCGAGTTGAAATGGGAAGACACAACTCCTGTGCTCTGTTTGTGCCCTGAAGAGTATAGCATGTACAGAGGAGCAGGAGGGTGTTCAGAAGCAAGCGAGAAAGAGTCTCTTCTCATACAACCTAGCAGCGGAAACGAAATTATGACAATTGAAAACATAGATGAAAATAGGAAAGAGGAGAGCAGCTCATGGGAGAAAGAGAAGAATCATCTGAGAAGGAGTGATTCAACGTCAACAAGCCAAAACCGATTCCTGACACTAACAATTACACCTGACAGTCTCAGACATGGTCGACTGCGTATTCCATTGCAATTCATGCGGGAGAATAGGATGAACACGCCTGGGGATATAACTCTTTTGGGTAAAGATGGTGCAAAGTGGCTGGTAAGCCTTTTACTGGAAAGAAGAGGAAGAATGAGTTTGGGAAAGGGATGGAAAGATTTTGCTAAAGCAAATGGCTTAAAGACGGGCGATTCCATCACGTTGGAATCAATTTGGGAAGACGCAACTCCTGTGCTCAGTTTGCTCCGTATAGAGCCTAACAGTGATGGACGGCAACAAGGTGAGTACTCAATAGCAAGAGAGAAAGAGACTATTTTCACAGAACTTAGCAGTGGAGAGAGCAGAAAGTATCCTCTTGGAAGGCTAGATTCGTCTTTAGCAATCCAGTCAACAGTTTCACCTGAAATAGGTGTTTCTCATCATCTTCGAATTGGCGAGATCGCCGTTTTCCGACATGAAGGAGATATGATGTTCCAGGTCTCAGATTTCGGACCCAGCTGCTGTGAGATTCGAGATGTACTAACTCCAATCAGAAACCATTATCAGGAAAACATTGAGCTTCCGAGAAAGAAGAAAGTGAAGTTGAACAACCCAGGAACAGAAGCAGTTTTTTCATCAGACCGCTCTTGTTTTGTAGCACACGTGACAGCTTCAAATCTACACACAAATGCTCTGCCTCTTCCACAAGAGCCTCTTCCACAAGATTTCTCAAGCTCAGATGGTCATAACAGGAAATGTCCCAAGAATAGTCCGACACAGATAATCTCATCATATTCTTCAAACGAGAAGCACTTAGCAACATTTACACTTGCACCTGTCAATGTCAGAAATTGTAGACTGCGTCTTCCAATGCAATTCACGAGGGAGAATGGGATAAACAAGCCTGGGAAGATATATCTGTTGGGAAAAGATGGTTCTAAATGGCTGGCAAATCTTCTCCAGGAAAGCAGAGGAAGAATGACTTTAGGAGACGGCTGGAAAAGTTTTGTTACAGCAAATGGCTTAAAGACGGAGTATAGCATTGACAGTAGAGAAGAAGGAGGGTGTCCAGAAGCAAGGGAGAAAGAGCCTCTTCCCATAAAACCTAGCAGCGGAAAAGAGATCAGCATATCCTATAACAACGAAGATGAGAACAGCAAAGAGGAGAGCACCTCTTGGGAGAGAGAGAAGAATCAACTAATATCGAGCAATTCAAGTTCACCCAGCCAAAACCGATTTCTGACATTAACTATCACACCTGACAGTCTCAGACATGGTAGACTGCGTCTTCCATTGCAATTCATGAGGGAGAATAGCATGAACACGCCTGGAGATATAACTCTTTTGGGTAAAGATGGTGCAAAGTGGCTGGTAAGCCTTCTACTAGAAAGAAGAGGAAGAATGAGTTTGGGAAAGGGATGGAAAGATTTTGCTAAAGCAAACGGCTTAAAGACGGGCGATTCCATCACGTTGGAGTCAATTTGGGAAGACGCAACACCTGTGCTCAGTTTGCTCCGTATAGAGGCTAGCAATGATAGAGGGCAAAGTGAGTTTTCAAAACTGTCTCTTTCCACAGGACGTAGCAGTGGGAACAAGACAAGGAAAGCAGAGAACAATAGAGAAGGGAGTAGCTCAGGGGAGTTTGAGAAAAGTAAAGATCTTCTTAGAAGAGTGCATTCATCTTTAGCAATCCAAAACCGAATCGTGATGTTAACACTTACACCTGAAGATGTCAGAGATTGTAAGCTGCATCTTCCTAGCCAATTCATGAGGACTAATGGCATCACCAAGCCTGGAAAGATAACTATGTTGGGTAGAAGCGGGATGAAATGGTTTGCATATTTACTATCAAACGACGGAGCTGTCGCTTTAGGAAATGGTTGGAAAGGTTTTTGTGAGGCTAATGGCGTGATGGTAGGAGAATCTTACATTTTGGAATACATTCCCAGAGAAGACACAGATCATGTATTTAAGTTTTGCTCCAACTTCGGAGACCAAATACATAACTGGTAA
Protein Sequence:
- >Thhalv10000010m|Eutrema_salsugineum|B3|Thhalv10000010m
MVLHLSDLGPSSNNDQDKMGYISMKKHQHPRSEDYGGDDDNTELARKKKAKMNKSEAEADSSSSDHSCFVALVTASNLHTDALYLPKDFTSSNVLKRECRKIVLTDGGERSWALDLRFNKSCDSFYITRGWRSFCEENGRKEGGFFVFKLVGNSETPFLSFCSTESFNDGTNKNSKESCMELERKKNHLRCIDSTSPIENRFVTLTLPQCSLRDSRIFIPLPFLRENDLDKPRLITLLGKDGTKQVADLRRDGSGRMRLTKGWREFAKANGLKAGESFTLESIWKDKTPMLRLVHTDSSSDGRQQRQCYSKASEKESVSTESRREKASKKVSPLSSGKQISKEERKKNHLRFRDSPSPSQNPFVTLTVTHDSLRNCRLHLPLSFMRKNGLDKSGMITLLGKDGTKWPANLLRENATGRMSLGKGWKDFAIANSVKAGESFTLKSLWKDKTPMLSLVHTDSSSDGRQQGQCYSKASEKESVSTEPSGENKTQGAKNNREEKRHSSSGIGNQFVTLTLKPEDVRDCKLNKSWASYEVRRIQRFPHRSRTHCRLKIVRCDAHDLRIRKVVVFLRHGRRYDVPEFTRKKKTKKNNPETEAFSTSDHSCFEAHVSATNCLDFRLQDSTSSDAIRKKCDKKYSSRRMVKSYESSEKRFVTFTLAPVDVRHCRLRLPMQFSRENGINKPGKIYLLGNDGSKWLANLLLESRGRMTVGDGWKSFVKANGLKIGESYTLELKWEDTTPVLCLCPEEYSMYRGAGGCSEASEKESLLIQPSSGNEIMTIENIDENRKEESSSWEKEKNHLRRSDSTSTSQNRFLTLTITPDSLRHGRLRIPLQFMRENRMNTPGDITLLGKDGAKWLVSLLLERRGRMSLGKGWKDFAKANGLKTGDSITLESIWEDATPVLSLLRIEPNSDGRQQGEYSIAREKETIFTELSSGESRKYPLGRLDSSLAIQSTVSPEIGVSHHLRIGEIAVFRHEGDMMFQVSDFGPSCCEIRDVLTPIRNHYQENIELPRKKKVKLNNPGTEAVFSSDRSCFVAHVTASNLHTNALPLPQEPLPQDFSSSDGHNRKCPKNSPTQIISSYSSNEKHLATFTLAPVNVRNCRLRLPMQFTRENGINKPGKIYLLGKDGSKWLANLLQESRGRMTLGDGWKSFVTANGLKTEYSIDSREEGGCPEAREKEPLPIKPSSGKEISISYNNEDENSKEESTSWEREKNQLISSNSSSPSQNRFLTLTITPDSLRHGRLRLPLQFMRENSMNTPGDITLLGKDGAKWLVSLLLERRGRMSLGKGWKDFAKANGLKTGDSITLESIWEDATPVLSLLRIEASNDRGQSEFSKLSLSTGRSSGNKTRKAENNREGSSSGEFEKSKDLLRRVHSSLAIQNRIVMLTLTPEDVRDCKLHLPSQFMRTNGITKPGKITMLGRSGMKWFAYLLSNDGAVALGNGWKGFCEANGVMVGESYILEYIPREDTDHVFKFCSNFGDQIHNW*