Information report for Thecc1EG042290t2
Gene Details
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Functional Annotation
- Refseq: XP_007017086.2 — PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
- Refseq: XP_017983611.1 — PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
- Swissprot: Q8W4L5 — VAL1_ARATH; B3 domain-containing transcription repressor VAL1
- TrEMBL: A0A061GYW3 — A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
- STRING: EOY34705 — (Theobroma cacao)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0005739 — Cellular Component — mitochondrion
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla008097
- Gossypium arboreum: Cotton_A_04150_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A03G0189, Gh_D03G1392
- Juglans regia: WALNUT_00005755-RA, WALNUT_00015545-RA
- Manihot esculenta: Manes.18G126700.1.p
- Populus trichocarpa: Potri.013G157500.1, Potri.019G130300.1, Potri.013G157500.2, Potri.019G130300.2
- Prunus mume: XP_016652574.1, XP_016652569.1, XP_008241197.1
- Pyrus bretschneideri: Pbr017287.1
- Ricinus communis: 29976.m000497
- Ziziphus jujuba: XP_015874689.1
Sequences
CDS Sequence:
- >Thecc1EG042290t2|Theobroma_cacao|B3|Thecc1EG042290t2
ATGGGGTCCAAGATTTGCATGAATTCCTCGTGTGGAACTGCTAGCACCCATGAATGGAAGAAGGGATGGCCTCTGCGATCTGGTGGTTTTGCTCATCTCTGCTACCGTTGCGGCTCTGCCTATGAGGATAGTGTTTATTGTGATACATTCCACTTGGAGGAATCTGGATGGAGGGAGTGTCGCTTATGTGGCAAACGTCTTCATTGTGGTTGCATAGCCTCCAAGTATCTGCTGGAACTCCTAGATTATGGAGGTGTTGGGTGTACCAGCTGTGCAAACAGCTCCCGACTTCATTCAGTTAGAAGAATTCAGACGCATGGTGATGAAATTCCCAATGGATTTAGTGCAATGCCAATGAATAATGCTGGATCCAGTTCTGTTGAAAGTAAAGCAGTTGGTGATCATGTTGATGAGAGAACACTTGCACAATTGTGCAAAATCATGGAGGCTAATGAATGCAACCTCTTGCCTCAATCTCAAAGAGGTGATCCAAATGCATCTCTTGGGCAACACAGAGGAGAGGAAGCCATGTGTTCCGTTGGGGAAGTGGGTGCTGGTTTTTCAAACTCTATGCAACCATATGTTCGACCACCTAACTTTGCGCAAACAGACAATGCTAGACCAGCATTAGACATTAGAGATATTCATGATTCACTTTCACAACCTTCTTTGAGTATGACTTTGGGAGGACCATCTGGGAATCCAAATTTTGTTCTACCTTTTTCCAGTGGGCTTGCTGAGGGAAAAGAACAGAGCAAAATGTCGTCCTCTTTTCAACAAGGGCAGCGATCTCGTCCAATATTACCCAAACCCTCAAAAAATGGTCTAGCGACAAGTTCAGAAGTAAACAAAAGCATGGTTCCCCAGGCGCGAATTGCAAGGCCACCAGTTGAGGGACGGGGGAAGAATCATTTACTTCCTCGGTATTGGCCAAGGATTACTGACCAAGAGCTGCAGCAACTATCAGGAGATTTGAAATCTACCATTGTCCCACTGTTTGAGAAGGTTCTCAGTGCCAGTGATGCTGGTCGAATCGGTCGATTAGTGCTCCCAAAAGCATGTGCTGAAGCGTATTTTCCTCCCATTTCACAATCAGAAGGTCTTCCTCTAAGGATTCAAGATGTAAAGGGGAAAGAATGGACGTTTCAGTTCAGGTTTTGGCCAAATAACAATAGTAGGATGTATGTCTTGGAGGGTGTAACACCTTGTATTCAGTCCATGCAATTACGAGCAGGCGATACTGTAACATTTAGTCGAATAGATCCTGGAGGTAAACTTGTTATGGGGTTTCGGAAGGCGACAAACTCTGATACACAGGAAGGCCAAACATCTTCCCTTCCTAATGGTGCACATTCTGGGGAAACTTCCAATTCTGGTGGCATTGAGAATTTGTCTACAGTGAGTGCTTACTCTGGTCTTTTTCAGACCCCAAAAGCAGGAAAGGATCCTCTTGTAAATTCTCTGTCTGAACATTTGAGTTTGGCTGATGGAACCATCAGTTGGGGTAGAGGTCAGAACCATGGAGACGGAGCAAATGAGGATCCAGTGCAGCAACCAGCAGTGAATGCAGAGAAGAAGAGGACTAGAAATATTGGGTCCAAAAGTAAGAGGTTGCTGATGCATAGTGAGGATGCTTTGGAGTTAAGGCTCACGTGGGAAGAAGCACAGGACTTGCTTCGTCCACCCCCAAGTGTCAAGCCTAGCATTGTGACTATTGAGGACCATGAATTTGAAGAATATGATGAACCCCCTGTTTTTGGAAAGAGAACTATATTTGCAGCTCAACCATCTGGGGGACAGGAGCAATGGGCCCAGTGCGATGATTGCTCCAAATGGCGAAGGTTACCCGTTGATGTTCTTCTCCCTCCAAAGTGGACATGTTCAGATAATGTTTGGGATTCAAGCAGGTGTTCATGTTCTGCATCAGAGGAGATTAGCCCAAAGGAACTGGAGAATCTTCTTCGAGTGGGTAGAGATTTGAAGAAGCGAAAAATTCTAGAAAGTCCTAAGCTGGCCACAGAACGTGAACCTTCAGGCTTGGATGCTCTGGCTAGTGCTGCAGTTTTAGGAGACAAAATGGGTGATGTGGGGGAGTCTTCAATTGGAGCTACAACAAAACATCCCCGACACCGCCCTGGCTGTACCTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAGGGAAAGCACAAACCTACATGCACCTGTAATGTGTGCATGACTGTAAAGCGCCGGTTTAAAACACTCATGCTGCGGAAGAAGAAACGTCAATCAGAACGTGAAGCAGAAATTTCCCAGAAAGATAATAATGGCCACAAGGATGAATCGGAGCTGAATGACACAAGACTTGATCATTCAGAGAATGAAGGAAGCCACAGCAGAATTCAAGCTGAGGTAGCTGAGACCAGTACTGGACAAATAGACCTGAATTGTCACCCCAATCGTGAAGACCTGCAACTTGAAGAACAAGGATTGAATATGATGAGTCTTGTTCAAGCTGCTGGCATGCCGATGGAAAATTATATAAAGCAAAATGGGCTTCCAAGCCTAATAAGTGAGCAACAGGGTAGCCTTGGTTCCCATGCACTATCACAAGCTAACAAAGAGAATGAGAGACACCTATCTGATGAAGAGTTTCTTGCATCTGTAGGATGGGAGCATGACAACAGAAGTGATGAAGGGCATAAGGAGCCCAGTTTGGAGAGAAATGGTCTTCAGTAA
Protein Sequence:
- >Thecc1EG042290t2|Theobroma_cacao|B3|Thecc1EG042290t2
MGSKICMNSSCGTASTHEWKKGWPLRSGGFAHLCYRCGSAYEDSVYCDTFHLEESGWRECRLCGKRLHCGCIASKYLLELLDYGGVGCTSCANSSRLHSVRRIQTHGDEIPNGFSAMPMNNAGSSSVESKAVGDHVDERTLAQLCKIMEANECNLLPQSQRGDPNASLGQHRGEEAMCSVGEVGAGFSNSMQPYVRPPNFAQTDNARPALDIRDIHDSLSQPSLSMTLGGPSGNPNFVLPFSSGLAEGKEQSKMSSSFQQGQRSRPILPKPSKNGLATSSEVNKSMVPQARIARPPVEGRGKNHLLPRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGKEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKATNSDTQEGQTSSLPNGAHSGETSNSGGIENLSTVSAYSGLFQTPKAGKDPLVNSLSEHLSLADGTISWGRGQNHGDGANEDPVQQPAVNAEKKRTRNIGSKSKRLLMHSEDALELRLTWEEAQDLLRPPPSVKPSIVTIEDHEFEEYDEPPVFGKRTIFAAQPSGGQEQWAQCDDCSKWRRLPVDVLLPPKWTCSDNVWDSSRCSCSASEEISPKELENLLRVGRDLKKRKILESPKLATEREPSGLDALASAAVLGDKMGDVGESSIGATTKHPRHRPGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREAEISQKDNNGHKDESELNDTRLDHSENEGSHSRIQAEVAETSTGQIDLNCHPNREDLQLEEQGLNMMSLVQAAGMPMENYIKQNGLPSLISEQQGSLGSHALSQANKENERHLSDEEFLASVGWEHDNRSDEGHKEPSLERNGLQ*