Information report for Thecc1EG019701t3
Gene Details
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Functional Annotation
- Refseq: XP_007033532.2 — PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2
- Swissprot: Q5CCK4 — VAL2_ARATH; B3 domain-containing transcription repressor VAL2
- TrEMBL: A0A061EIG6 — A0A061EIG6_THECC; Transcription factor, putative isoform 3
- STRING: EOY04456 — (Theobroma cacao)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_19984_BGI-A2_v1.0, Cotton_A_04320_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A10G1335, Gh_D10G1137, Gh_D02G0047, Gh_A02G0033
- Manihot esculenta: Manes.09G117700.2.p, Manes.09G117700.1.p
- Populus trichocarpa: Potri.016G136500.2, Potri.016G136500.1, Potri.006G108300.1
- Prunus mume: XP_008244875.1
- Ricinus communis: 29915.m000469
- Ziziphus jujuba: XP_015897450.1
Sequences
CDS Sequence:
- >Thecc1EG019701t3|Theobroma_cacao|B3|Thecc1EG019701t3
ATGGCGTCAAAAAGTTGCATGAATGGACTATGCGGAGCGTCCACGTCGATTGAGTGGAGAAAAGGCTGGACTCTGCGATCTGGAGATTTTGCTAATCTTTGCGATAAGTGCGGGTCTGCATATGAACAATTGATATTCTGTGACGTGTTCCACTCAAAGGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTCCATTGTGGATGTATAGCTTCCAGGTGCTTGCTTGAGCTTCTTGATAGTGGAGGTGTCAACTGTATAAGCTGCACTAAAAAGTCAGGATTTAACCCTATGATTGAAGATGTAAAACCTAATGGTTTTAGTATAGTGAAGGGTGATGCTGGTCAATTGCACTCAACCTCTGCGGACAACCAATTGAGTGGTGTGAGCATTGAAAACCTAAAGCTTATGCAGTTGACCAGCAATGCAGAAAGTATTGGGCTGAGACAAATGCTTCAGCTTCACAATGATGACGCAAGTGGGTCTTTGGGGCAAATGAAACAGGAGGAAGTTTTGCCTCCTGCAAGAGAAATTGGGAGCACATGCATGTCAAATATTAATCAAGTGTCTAATGGATCAGTTCAATCTGTGAAACCGAACATTTGTAAAGCAAATATCTATGACTCACTGCCACAAACAAACTTGAGTATTTCTTTGGGTGGTCCATTAGGGAACCAAAATGTCTTTCCTGGTTCAGTTGTAGATGAAAAGGGTAAGATGTCTTCAGTCTTGCAACAGGCATCCAAATCTCGCCATCTTCTGCCCAAGCCTCCAAAGTCGGTCCTTGCAACAGGTTTGGAGGTGAATGCAGGCATGGTACCTCCGATACGTGTTGCTAGGCCCCCTGCAGAGGGACGCGGACGGAATCAGTTGCTTCCTCGTTATTGGCCCAGGATTACAGACCAAGAATTACAGCAAATTTCTGGAGATTCGAATTCCACCATTGTTCCACTTTTTGAGAAGGTTTTGAGTGCAAGTGACGCTGGACGAATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCCGAAGCTTATTTTCCCCCCATATCTCAACCGGAGGGCCTTCCTCTAAAAATTCAAGATGTAAAGGGAAAAGAATGGATGTTTCAGTTCAGATTCTGGCCTAATAACAACAGCAGAATGTATGTTTTGGAGGGTGTCACTCCTTGCATACAGTCTATGCAGTTGCAAGCTGGAGATACTGTTACATTTAGCCGCATGGATCCAGAAGGGAAGCTTGTTATGGGGTTTCGTAAAGCAACAAACACTGCTGCAGCGCAGTCACTGAAGGGAAGCACTGATCCCCACCTAAATGCATTGTCCAAACATTTGAGTTCAGCTAGTGGTGATATTAGCTGGCATAAATCTGATAAGCATGAGGACAGGACAAGGGAGGGCTTATTACTACCATCTATGCTGGCTCCAGAGAGAAAAAGAACTCGGAATATTGGGTCCAAAAGTAAGAGGTTGCTGATTGACAGCCAGGATGCTTTGGAGCTGAAACTTACTTGGGAAGAGGCACAAGATTTGCTCCGCCCACCCCCGAGTATCAAGCCAAGTGTTGTCACGATTGAGAATCATGATTTTGAAGAATATGATGAACCTCCAGTTTTTGGGAAGAGGAGCATCTTTGCCGTCCGTTCAAATGGGGGACAAGAGCAATGGGCTCAGTGTGATAGTTGTTCTAAATGGAGAAGGTTGCCTGTTGATGCTCTTCTTCCACCTAAGTGGACATGTGCAGACAACAATTGGGATCAAAGCAGGTCTTCCTGTTCTGCACCAGATGAACTTACCCCAAGGGAGGTTGAAAATCTCCTTAGATTAAATAAAGATTTCAAAAAAAGGAGAATAGTAGCATACCATAGACCAACCCAGGAGCATGAATCATCTGGTTTGGATGCTTTGGCTAATGCTGCAATCCTTGGAGACAATGTAGATAATTTAGGCACTACATCAGTGGCAACGACAACTAAACACCCAAGGCATCGTCCTGGTTGCTCTTGCATCGTGTGCATCCAGCCTCCAAGTGGGAAGGGAAAACACAAGCCTACATGCACATGTAACGTGTGCATGACAGTTAAACGTCGTTTTAAAACCCTCATGATGCGCAAGAAGAAGCGTCAGTCAGAGCGTGAAGCAGAGATTGCTCAGAGGAATCAGCAAGCATGGGGCTCTAGAGAAGAAGCAGAAGTAGACAGCACCTCTAAGCATGTATCATCGCACCACGATCCTTCTGAGAATGAAGCAAGGTCAGTTAATGAATTAGAATCCAAGAGCCAGGGCCATAACCTACCCCCCAAGGTGGTTGAATCTAACAAGGGACAGATAGACTTGAACTGCGATCCTGATCGTGAGGATGATTCACAATTAGGTTCAACCCATGTGAGCATGATGAATCTTCTTCAAGTAGCAAGCCTTCCTTTGGAGACTTACCTGAAGGAGAATGGTCTTACAAGCTTGATATCTGAGCAGCCAGCAAACTCTGCGTCACATGCTCCACCACAGATCATTGCTGAGGGTGACGCGCAAGATAATAGCTGTTTCCCTTCGGCCACGGAAGAGCGTGAGAGTAAGGATGAAGAAAATGGTGAAACTGGATCAGATAGAGTTGAGAACGATCCTTAA
Protein Sequence:
- >Thecc1EG019701t3|Theobroma_cacao|B3|Thecc1EG019701t3
MASKSCMNGLCGASTSIEWRKGWTLRSGDFANLCDKCGSAYEQLIFCDVFHSKDSGWRECTSCGKRLHCGCIASRCLLELLDSGGVNCISCTKKSGFNPMIEDVKPNGFSIVKGDAGQLHSTSADNQLSGVSIENLKLMQLTSNAESIGLRQMLQLHNDDASGSLGQMKQEEVLPPAREIGSTCMSNINQVSNGSVQSVKPNICKANIYDSLPQTNLSISLGGPLGNQNVFPGSVVDEKGKMSSVLQQASKSRHLLPKPPKSVLATGLEVNAGMVPPIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLKIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKATNTAAAQSLKGSTDPHLNALSKHLSSASGDISWHKSDKHEDRTREGLLLPSMLAPERKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPSIKPSVVTIENHDFEEYDEPPVFGKRSIFAVRSNGGQEQWAQCDSCSKWRRLPVDALLPPKWTCADNNWDQSRSSCSAPDELTPREVENLLRLNKDFKKRRIVAYHRPTQEHESSGLDALANAAILGDNVDNLGTTSVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQAWGSREEAEVDSTSKHVSSHHDPSENEARSVNELESKSQGHNLPPKVVESNKGQIDLNCDPDREDDSQLGSTHVSMMNLLQVASLPLETYLKENGLTSLISEQPANSASHAPPQIIAEGDAQDNSCFPSATEERESKDEENGETGSDRVENDP*