Information report for Thecc1EG003056t5
Gene Details
|
|
Functional Annotation
- Refseq: XP_007049856.2 — PREDICTED: B3 domain-containing transcription factor ABI3 isoform X4
- Swissprot: Q01593 — ABI3_ARATH; B3 domain-containing transcription factor ABI3
- TrEMBL: A0A061DMT1 — A0A061DMT1_THECC; ABI3, putative isoform 5
- STRING: EOX94011 — (Theobroma cacao)
- GO:0006357 — Biological Process — regulation of transcription from RNA polymerase II promoter
- GO:0009657 — Biological Process — plastid organization
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0031930 — Biological Process — mitochondria-nucleus signaling pathway
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0001076 — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g038867m
- Glycine max: Glyma.08G357600.1.p, Glyma.08G357600.2.p, Glyma.08G357600.3.p
- Gossypium arboreum: Cotton_A_33861_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D07G1550, Gh_A07G2239
- Juglans regia: WALNUT_00018591-RA
- Manihot esculenta: Manes.13G043500.1.p, Manes.12G043500.1.p
- Populus trichocarpa: Potri.002G252000.1
- Prunus mume: XP_008235529.1, XP_008235528.1, XP_008235526.1
- Prunus persica: Prupe.8G207700.5.p
- Ziziphus jujuba: XP_015892180.1
Sequences
CDS Sequence:
- >Thecc1EG003056t5|Theobroma_cacao|B3|Thecc1EG003056t5
ATGAAAGGCGTGCAGCAGCACCTGCGTTGTGAAGATCTGCAAGCAGGAGCCAGAAATGAAGCAAACCCTTCAGGGTTTGATGCTCCTGAGGTAGAAAGAGTGATGGGTACAGAAGAAAGAGAGATCTGGCTTGATAGGCAGCAAGATGACTTGCTTGATGTTAACGATGCTTCAATTTTCTATGGTGATTTCCCTCCTCTGCCTGATTTCCCTTGCATGTCTTCTTCTTCGTCCTCTTCGTCGACTCCGGCACTTGTAAAGGCCTTTGCATGTTCTTCTTCTGCTTCTACGGCATCGTCTTGTTCTTCCGCGGCTTCTTGGGCAGTTTTGAAGTCAGATGCAGATGAAGATGTGGAGAGAAAGAATAATTGCCATGGTCATCATCATCACCATCATCATCATCATCATCATCATCATCATAATCACCACCACCACCATGGTCAGCATGATCTAGTGGATGGAACACCAGCAGCGTTATCTTCTACCGTCTCCATGGAGATTCTTCAGCCGTCAGATCATGTCATGCATGGTGTTGATTGTATGGATGTTATGGAGAATTTTGGGTACATGGATCTGCTTGACAACAATGATTTTTTCGATCCTTCTTCTATATTTCAACATGATGATACTGGTCTAGAGGAGTTTCAACAAGAGCAAAAGCCACAGCAGGAACAGTCGCAACAGCCGGAGCAAGAAGTACCGACGATATATAGCAAAAATGAAGAAACCCAAGAAGAAAAATCTTCGGATGATTTAGCCATGGTGTTCTTGGAGTGGCTCAAGACCAACAAGGAGACTGTTTCAGCAGAGGACTTGAGGAGAGTTAAAATCAAGAAAGCTACCATAGAGTGTGCTGCCAGGCGTTTAGGTGGAGGCAAAGAGGCCATGAAGCAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACCAATCATCTTCAAAAAAGGCGCATCAAAGAATCAGCCTCCAATAACAATATTGATATTCCCTACCAATACCAAGACAACTTTCAAAACCCTAACCCTAATCCAAACCCTAACTCGAACCCAAACCTGAGTTGCGATTCTGGCCCACCACCTGAACCAAACTCTTGTTTCTCTCAGCCACCCTGGATTCCACAACCAACTTATGTAACGGATCCGGTGGCCGTGGTCGCAGGTTTTGCACCAACGGTCGGGTATATGGGCGACCCGTTTTTAAATGGAGCTCCTAATATCAATAGCCATCCTTATCAGCCTCCAACAGATTATCCAATGCTGGACTCAGCTCAAACATGGCCGCCTTCACAATTTGCTTTGGCTTCTCAGTACAACTCATTTCCAGACAATAATCTTCATCCGGCTCCACATCAACCATCTGCTTTTCCTGGGTATGGGAATCAATATCCTTATCAGTATATCCAACGGCATAATAACGAAGAAAGGTTGGTGAGGTTAGGCTCATCTGCTACTAAAGAAGCAAGAAAGAAGAGGATGGCTAGGCAGAGAAGGTTTGCACCACACCATAGAAATCACAATTATCATAATAATCAGCAAAGCCAGCACCAAAATCAGAGTGTTGACCAGCATGTAAGACTTATTAAAGATAATTGTGCGGCGGCGGCCCAAGCCAACTCCGGAAACTGGGTCTACTGGCCAGCGGTTGCCTGTGGGATGGCTTCAAACCCTCCGCTTCTACCTGGTGATGTTCCTGTGGTGCATCCTGTGGATCGACCCTCAATGCAGGGGCAGACTTATCAGCGGCATGTGGCATCAGATAGACGACAAAAAGTGTTGAAGCAGAGCGATGTGGGTAATCTTGGAAGAATCGTGCTGCCAAAAAAAGAAGCAGAAACCCATCTGCCAGAGCTAGAAGCAAGAGATGGGATCTCCATTGCCATGGAAGACATAGGGACGTCTCGTGTATGGAACATGCGCTACCGATTCTGGCCAAACAACAAAAGCAGGATGTATCTCCTTGAAAATACGGGGGATTTCGTGAGAACAAATGGGCTACAAGAAGGAGATTTCATAGTCATATACTCAGACGTGAAATGTAGCAAATATTTGATACGAGGAGTTAAGGTACGGCAATCAGGACCGAAATCGGAGACCAAAAGACCAGGAAAATCGCAGAAAAACCAGCATTCAAATTCTCCAGCGGCTGCTGCTGTTAATGGTTCGTCATCTTCACCCATCAAACAGTAA
Protein Sequence:
- >Thecc1EG003056t5|Theobroma_cacao|B3|Thecc1EG003056t5
MKGVQQHLRCEDLQAGARNEANPSGFDAPEVERVMGTEEREIWLDRQQDDLLDVNDASIFYGDFPPLPDFPCMSSSSSSSSTPALVKAFACSSSASTASSCSSAASWAVLKSDADEDVERKNNCHGHHHHHHHHHHHHHHNHHHHHGQHDLVDGTPAALSSTVSMEILQPSDHVMHGVDCMDVMENFGYMDLLDNNDFFDPSSIFQHDDTGLEEFQQEQKPQQEQSQQPEQEVPTIYSKNEETQEEKSSDDLAMVFLEWLKTNKETVSAEDLRRVKIKKATIECAARRLGGGKEAMKQLLKLILEWVQTNHLQKRRIKESASNNNIDIPYQYQDNFQNPNPNPNPNSNPNLSCDSGPPPEPNSCFSQPPWIPQPTYVTDPVAVVAGFAPTVGYMGDPFLNGAPNINSHPYQPPTDYPMLDSAQTWPPSQFALASQYNSFPDNNLHPAPHQPSAFPGYGNQYPYQYIQRHNNEERLVRLGSSATKEARKKRMARQRRFAPHHRNHNYHNNQQSQHQNQSVDQHVRLIKDNCAAAAQANSGNWVYWPAVACGMASNPPLLPGDVPVVHPVDRPSMQGQTYQRHVASDRRQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVRTNGLQEGDFIVIYSDVKCSKYLIRGVKVRQSGPKSETKRPGKSQKNQHSNSPAAAAVNGSSSSPIKQ*