Information report for Spipo7G0056800
Gene Details
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Functional Annotation
- GO:0009657 — Biological Process — plastid organization
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0031930 — Biological Process — mitochondria-nucleus signaling pathway
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0001076 — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Beta vulgaris: Bv7_167370_hxew.t1
- Citrus sinensis: orange1.1g038867m
- Glycine max: Glyma.08G357600.2.p, Glyma.08G357600.1.p, Glyma.08G357600.3.p, Glyma.18G176100.2.p, Glyma.18G176100.1.p
- Juglans regia: WALNUT_00018591-RA
- Manihot esculenta: Manes.13G043500.1.p
- Musa acuminata: GSMUA_Achr7P23040_001
- Nicotiana benthamiana: Niben101Scf01687g08001.1, Niben101Scf21140g00009.1
- Nicotiana tabacum: XP_016433829.1, XP_016443113.1, XP_016443112.1
- Populus trichocarpa: Potri.002G252000.1
Sequences
CDS Sequence:
- >Spipo7G0056800|Spirodela_polyrhiza|B3|Spipo7G0056800
ATGGCGTCGGATCTGAATATAGATTGCCACGAGGAGCAGGAGATGCAGAAGCTGGCTTGTGAGGCAAAGAAGATGATGATGGTGGAGGAGCAGGATGCAGTGGAAATGCAAGAAGGCAAGCGGGCGGGTGTCGGTTTATATCCTGGACAAGAGCTTAGCGGGGAAGACGAAGTGCAGAAAGGTTCTCTGGGAGTTGCAGAGGATGAGGATATGATGATGGCGGAGATCGAAACCGACCTCATCTTCTCCGACGACGCCTTTCCTTCTCTTCCCGATTTCCCATGTCTCTCCTCTCCATCGAATGCCGCATGTCCGTCTTCTTCTTCTTCTTCAAATTCGTCTTCCTCCGCCTCTTCAGTACCTTGGGCCCTCGGCAGACAGGACCATCAGCAGCATGCAGAGGGCCAAACGTCGTCCTCCGCCGTGGAAGATGTCCCGGTGACTCTTCCTTCCACGCCGTCCGATAGGAAACATCCACTGGAGTCCCTGGCTTCGGACTGCAGCATGTACCAGTTCTCTGGCATGGATCTTCTGGGTTCAACCGATGAATCATGGGACCCCTTGTCTCTCTTTCCCGACGACGGGGAGATCAACAATATCGATGGAGACGAGCCCATCCTGCAACAGGGTGTTCGCTGGACGCAGCAAGGAGAAGAGCTTATCCAACAGCAACACCACCGGGAGCTGCAGCTGTTAACCCTAGAAGAAGGAGACGGAGGTGACAAAGGTGGGGGCTGCATATCCCAAGATCTGGCGATGGTGTTCCTGGAGTGGCTTCGAGACAATAAGGAGACCATCTCCCCTCAGGACCTGAGAAGCATCAAGCTCCGGCGCTCTACCATCGACTGCGCCGTTCGCAGCCTCGGAGGAGGCAAGGACGGCATGAAAAAGTTGCTCAAGCTCATCCTCACCTGGGTGCAGAACAATCATCTCCAGAAGAAAAGGCGCCCTTCGACGGATCTTCTCGCCGGAGAAGAAGAAGAACTCGAGATCACAAACCTTTACCAACAAACACAGGCGGCATCGATCAGTCCTCTCCCTGATCTCGTTCAGGCCCCCGTCTCTGATCCTCACGAGGGTCTTGTTCCAAACTCCTGCCAGAGTTTCCTTCCGGTCGCCACTCCCGGCCCCGCCATCCAAGGGCCTTGTAGCCCTTGGGCGCCTCCCGGGGACCCTTGTGGCGGCGAAGGTCTATACTCGACGGCTGCTTCAACCACACCCCAGTCCATTCAGTCCTTCGCGCCTCAGTCATCTTTCCAAGCCGTGGAACCCGTTTGCCCTTGGTCGCAGGCGCTGCCTCAATACCCGGTGTTCTCCACTTCGCCACATCCCACACCATCGCTGTATACTTCCGGCGGCCTTCCGGGTCAGTACCCGGTGGGGCACTTGTTCCATCAGGGTCCTGGAGAGTCTCTCGTGAGGTTGGCCTCGTCTGCTACGAAGGAGGCTAGGAAGAAGAGAATGGCAAGGCAGAGGCGTTTCTCTTCCCTCCACCATAGCCACAACCATCACCACCACCACCACCATCAACGTAATCAGCATCATCAGAGCACTCATGACCAGCACCAGCATCAGATTCATCTTCAGCAATGTGCTCCTGCTCTTGCGGGGGAAGGGCTTTGTTCACAAACGGACGCCCATGGAAGCTGGACCTTTCGGCCTTCTACCTCTCCTTCCTCCCAACAGGTGGTGGCGACTGGAGGAGCCACTGCCACGACCATGCCGCAGCAGAGGCAACACGATTTCCCACCTGGCAACACTGCAGACAGACGACAGAAAGTTCTCAAGCAGAGCGATGTGGGAAGCCTTGGGAGGATCGTCCTGCCAAAGAAGGAAGCCGAGACACACTTGCCGGAGTTAGAGACAAGGGATGGAATCTCCATCGTCATGGAAGATATCGTCACATCACGAACATGGAACATGCGGTACAGATTTTGGCCCAACAACAAGAGCAGGATGTATTTACTTGAAAACACAGGGGATTTTGTGCGATCCAATGGGCTACAAGAAGGAGACTTCATCGTGATCTACTCAGATATTAAATGCGGCAAATATATGATCAGAGGGGTGAAGGTTAGACAATCGATAGACCCCAATGTGAGCGGAAATAACTCCCACAAGCACAATCACCAGGGGAACGGTCATAACGGAGGCAGTGACACCAGGAATAACGTCCTCAAGAACGACGCTGGCTGCAGGAACAGCAGCAGAATCTACTGCGAAATGACAGAGAACAGAAACGAACATAGCGATGTCAAAGGATCAAGACAGTTTGCTGCAACCACCTCTGGTCTTCACACAAGGGAAGCATATCCATATGATGCTAGCACGGCCCACTAA
Protein Sequence:
- >Spipo7G0056800|Spirodela_polyrhiza|B3|Spipo7G0056800
MASDLNIDCHEEQEMQKLACEAKKMMMVEEQDAVEMQEGKRAGVGLYPGQELSGEDEVQKGSLGVAEDEDMMMAEIETDLIFSDDAFPSLPDFPCLSSPSNAACPSSSSSSNSSSSASSVPWALGRQDHQQHAEGQTSSSAVEDVPVTLPSTPSDRKHPLESLASDCSMYQFSGMDLLGSTDESWDPLSLFPDDGEINNIDGDEPILQQGVRWTQQGEELIQQQHHRELQLLTLEEGDGGDKGGGCISQDLAMVFLEWLRDNKETISPQDLRSIKLRRSTIDCAVRSLGGGKDGMKKLLKLILTWVQNNHLQKKRRPSTDLLAGEEEELEITNLYQQTQAASISPLPDLVQAPVSDPHEGLVPNSCQSFLPVATPGPAIQGPCSPWAPPGDPCGGEGLYSTAASTTPQSIQSFAPQSSFQAVEPVCPWSQALPQYPVFSTSPHPTPSLYTSGGLPGQYPVGHLFHQGPGESLVRLASSATKEARKKRMARQRRFSSLHHSHNHHHHHHHQRNQHHQSTHDQHQHQIHLQQCAPALAGEGLCSQTDAHGSWTFRPSTSPSSQQVVATGGATATTMPQQRQHDFPPGNTADRRQKVLKQSDVGSLGRIVLPKKEAETHLPELETRDGISIVMEDIVTSRTWNMRYRFWPNNKSRMYLLENTGDFVRSNGLQEGDFIVIYSDIKCGKYMIRGVKVRQSIDPNVSGNNSHKHNHQGNGHNGGSDTRNNVLKNDAGCRNSSRIYCEMTENRNEHSDVKGSRQFAATTSGLHTREAYPYDASTAH*