Information report for RrC519_p9
Gene Details
Functional Annotation
- Refseq: XP_018468355.1 — PREDICTED: B3 domain-containing protein REM1-like
- Swissprot: O65098 — REM1_BRAOB; B3 domain-containing protein REM1
- TrEMBL: M4D481 — M4D481_BRARP; Uncharacterized protein
- STRING: Bra011285.1-P — (Brassica rapa)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT4G31610.1
- Brassica napus: GSBRNA2T00030133001, GSBRNA2T00130472001, GSBRNA2T00130468001, GSBRNA2T00030132001, GSBRNA2T00022789001, GSBRNA2T00047942001
- Brassica oleracea: XP_013620588.1, XP_013620573.1, XP_013620551.1, XP_013620545.1, XP_013620560.1, XP_013622020.1, XP_013622019.1
- Brassica rapa: XP_009126832.1, XP_009126824.1, XP_009126818.1, XP_009108916.1, XP_009108915.1
Sequences
CDS Sequence:
- >RrC519_p9|Raphanus_raphanistrum|B3|RrC519_p9
ATGGTTACGCTTGATGATGAGTTCTTACGTAATCACACGAAGGTTTTGCTAACATCAGACGCGTCGGACAAAATTTGGAAAGTGAAACTGGACGGCAACAGGCTCGCCGGCGGGGACGTTTTGTTGGAAAAGAATAAGAAACCAGAAGCAGATACATCACCAGGCGATTCTTGTTTACTCAGAGCTAGTGTCACACCTTCTAGCCTCATCGATGATCGCTTGACAACATCGGAGAAGAATACTCCTCGTTTTCTGACACTAGAGTATACACCCAACCGTGTCAAGGCAGGGCAACTTTATATTTCAATGGCTTCATCGGGTTTCTTGTCTGAGAGTGGCATTAAGAAGTCTGGGGAGATAACTCTGCTGGACAATCATGGAAGAAAGTGGCCATCTTATCTACATATGACAGGACAACGCGGACGTGAATGGTTTTATATAAGAGGAGGTTGGAGAGAGATGTGCAAAGCGAATGGTGTTCAAGTGAATGACTCATTCGTGTTGGAGTTTATATGTGAAAATGCAAACCCTATTTTTAAGTTACACTCTAAGATCGAAAACAAGGGAAAAGGAAATCCTGTGGAAAAGAATCAAGAAGTGAGTGATAGACGACGCACTAGAGGTTCAAGCAGACCTAACACTAACTTGAAGCGCAAGCAACCAGAATCTTGCTCAGTCTCTGACCAAGTGGCTAACGTGAAACAAAGCATTCAAGAGACTCTGAACACCATCAGACATTTCAACGTGGAGCTCAAGACAAGGGAGAAGAATCTGGAAGCTTCACTCCTGGAAGTTGACGGCTTGGGTGTGTTTTTGAATCAAGATCTTCTTGCTTTTCTTGCAAGCTCAAGTGAAAAATCTGGAGTGAGAGTCAGCACCAGAAAAACGCTTGATGATGAGTTCTTACGTAATCACACAAAAGTTTTGCTAACATCAGACGCGTCGGACAAAAGGTGGAAAGTGAAACTGGACGGTAACAAGCTCGACGGCGGCTGGGAAGAGTTCGCCGCCGTTCATAATTTCAGTGACGGAGACGTTTTGGTTTTCAGTCACAATGGAGACGAGGTCTTTCATGTAGCTCGATCCAGTAACAGCGACATAGAGCACGAGTCTCCTAGCTTCACTGATACTGACGACACTGAAGTTGATGATGACGCTGATGATGCAGCAGGGGACATTTTGGTGGAAAAGAATAAGAAACCAGAAGCAGATACTTCTTGTTTCCTTAGAGCTCGTGTCACACCTTACAGCCTCAACAAAGATCGCTTGGATCTTTCTAAAGATTTTAAGTTTATGTCGTTTGATGAGAACAAGAAACAGTGTGAGATATATTTAGTTAATGAGGAAGAAAGAAAATGGACATTGAGGCTTTCAAGAAACATCTCAAGTGGTTCGTTTTACATTACAAGAGGCTGGGCTAACTTTTGCTCAGCTAATGGGTTAAGGCAAGGTGACATCTGTAACCTCAAACTCACCCAAAATGGGGAAACGCCTACGCTTTTGTTGTGTTCACGCGAGTCTGACAATGGCCATGAAGACCAAGAAGAAGAAGAATGTCCTGAAGCAGATGCAGGGAAGATATGTTCTGTAGGAGGCTGCAGCAAAGAGAAGACAACATTGGAGAAGAATACTCGTCGTTTTCTGACACTACAGTATACACCCAACCGTGTCAAGACAGGGCATCTAACTATTTCATCGGTTTTCTTGCGAGAGAGTGGCATTAATAAGTCTATGGAGATAACTCTGCTGGACAAAGATGGAAGAAAGTGGTCATCTTATCTACAGATGTCAGGACAACCCGGACGTGAAATGTTTTATATGAGAAAAGGTTGCAGAGAGATGTGCAAAGCGAATGGGGTCAAAGTGAATGACTCATTCGTGTTGGAGTTTATATGGGAAGATGCAAACCCTATCTTTAAGTTCCACTCTAAGATTGAATATAAGGGAAAAGGAAAAATAATAACTCGTAAGAAGAGAGCTCTACATCTAAGTACTGTGGAAAACACTCCGGAAGGGAGTAAGAGAGGATGTACTAGGGTTTCAAACAGATCCAACACTAACTTGAAGCGCGAGCCACCAGAATCTTGCTCAGTCTCTGATCAAGTGGCTAACGTAAAACGAAGCATTCAAGATACTCTGAACACCATCAGGTATTTCCGCTCTGAGCTCGAGACAAGGGAGAAGAATCTGGAAGCTTCACTACTGGAAGTTGACGACTTAGGGGAGAGGATATTGGGAATCAGCAAAATTCTCAACAATAATCTGGTTTAA
Protein Sequence:
- >RrC519_p9|Raphanus_raphanistrum|B3|RrC519_p9
MVTLDDEFLRNHTKVLLTSDASDKIWKVKLDGNRLAGGDVLLEKNKKPEADTSPGDSCLLRASVTPSSLIDDRLTTSEKNTPRFLTLEYTPNRVKAGQLYISMASSGFLSESGIKKSGEITLLDNHGRKWPSYLHMTGQRGREWFYIRGGWREMCKANGVQVNDSFVLEFICENANPIFKLHSKIENKGKGNPVEKNQEVSDRRRTRGSSRPNTNLKRKQPESCSVSDQVANVKQSIQETLNTIRHFNVELKTREKNLEASLLEVDGLGVFLNQDLLAFLASSSEKSGVRVSTRKTLDDEFLRNHTKVLLTSDASDKRWKVKLDGNKLDGGWEEFAAVHNFSDGDVLVFSHNGDEVFHVARSSNSDIEHESPSFTDTDDTEVDDDADDAAGDILVEKNKKPEADTSCFLRARVTPYSLNKDRLDLSKDFKFMSFDENKKQCEIYLVNEEERKWTLRLSRNISSGSFYITRGWANFCSANGLRQGDICNLKLTQNGETPTLLLCSRESDNGHEDQEEEECPEADAGKICSVGGCSKEKTTLEKNTRRFLTLQYTPNRVKTGHLTISSVFLRESGINKSMEITLLDKDGRKWSSYLQMSGQPGREMFYMRKGCREMCKANGVKVNDSFVLEFIWEDANPIFKFHSKIEYKGKGKIITRKKRALHLSTVENTPEGSKRGCTRVSNRSNTNLKREPPESCSVSDQVANVKRSIQDTLNTIRYFRSELETREKNLEASLLEVDDLGERILGISKILNNNLV