Information report for RrC282_p3
Gene Details
Functional Annotation
- Refseq: XP_018461106.1 — PREDICTED: putative B3 domain-containing protein REM4
- Swissprot: Q9SB79 — REM4_ARATH; Putative B3 domain-containing protein REM4
- TrEMBL: M4E5D7 — M4E5D7_BRARP; Uncharacterized protein
- STRING: Bra023991.1-P — (Brassica rapa)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT4G31630.1
- Brassica napus: GSBRNA2T00077739001, GSBRNA2T00099806001, GSBRNA2T00077740001, GSBRNA2T00099807001, GSBRNA2T00030135001
- Brassica oleracea: XP_013597030.1, XP_013598972.1, XP_013591088.1, XP_013591092.1, XP_013594668.1
- Brassica rapa: XP_009138028.1, XP_009138029.1, XP_009126756.1, XP_009126765.1, XP_009126773.1
Sequences
CDS Sequence:
- >RrC282_p3|Raphanus_raphanistrum|B3|RrC282_p3
ATGGTGAAGAAGGCGTCACTCTTCTCTCCGGCAACCCCACACTTCTTCCAGCCGTTTCTTCTCGGTTCCAAGAGTCATCTGAATATTCCTGTGAAGTTCTTCTCCGAACACATTGAAGGAAAACACGAGGGCAAGACGGTAACGTTGAGATCTGATGCATTGGAGGAAACATGGAAAGTGAAGATGGAAGGCCAAAGACTCACTCATGGTTGGAAGGAGTTCGTTGAGGCACATGTTCTTGGAGTCGGTGACTTTGTCGTCTTCAGACACGAACGAGACATGTTGTTCCATGTCACTGCTTTAGGATCCGATTGCTGTGAGATCCAATACACACCGTCTGGTAGTCGCCGCCAAGAAGACGAAGAAGAGAGTGTTGAAATAGAAAGATCTGCTAAGGAAGTTGAGAAGAATCTCACAAAGTTTGTCAAGTTAACTCCTACATCAACCAGCTTTGAGACCGGTAGACAGCATTTACCAGCAAGTTTCACGAGAGTGAACGGACTCATCAAGCCAGGGAAGATCATTCTGGTGGATAAAAAGGGAGCTGAGTGGGTGATGGAGCTTAAGGTTTTAAAAATAAATGGATCTATGTACATGTTCATTATGAGTCGTAATGGCTGGAGAATCTTCTGTGGCGTGAATGAAGTAAGAGCAGGGGAGTCTCTAACTTTGGAGTTGATCAGAGGAGGCGCAAGTCCTATGCTCAAGTTCTGTTCCAAGATGGAGCAACCACCGTTTGAAGCAGAGGCTCGTGCTTACAAGCGAGCTAAATGGAGTCAGGAAATAAGAGAGAAAACAGCTGAACAAGGAGAACCCTCTCATCGCACTAGGGTATCTAAGGAAACCAATGCATATCAAGAAAACTTGCAGGACAAGCAACCTTGCTCTGTCTCAGATTTGTTGATGACTAAGGTGAAAGATAGCGTTGTAAGTACTTTAACTAGTATCAGACGGTTTCGTGAAGAGCTCAAGACAAAGGAACAAGAACTGGAAGATTCATTGCAGGAAATCAAAAACTTAGTTATGGCTTCCTCAACCAAGAAACCAATCTTCATCATAGATCTGTCTGGACAAAACTCAAACCCTCTGATTCCTGATTCGTTTGTTTTGAATCACTTAAAGGGTAATGTTCAGTCTACTAAACTGATGAAACTTACTTCGGACGCTTCGGACAGAACATGGGAAGTTGAGTTGGACGGTCAGAGATTCGCCCGCGGATGGAAACATTTCTGTGATCACCACTGTATCCGAAACGACGACGTTTTGAGTTTCAGGCACGATGGTGACATGGTCTTCCACTATCTTCCAAGCAAATTCGCGAGGTCAAATGGTCTGAACAACAGACAGTGTGAGATCGATCTAAGGAACGAACATGGAAAGTCTTGGACTCTTGATCTTAGACACAACAAAACAACTGGTCAATCATTTGTCCGTAATGGTTGGACAAATTTCTGCAAATTAAATGGTATCAAAGCTGAATCTTTCTGTAGATTCAAACTTGTCCAAAACGGAAGAAAACCTGTGCTACAGTTGTGTCCCAACACTGAAGTTGGTGAGATTGAATCCGAGGACTGCTCAGACCCTGCTTCAATGAATCAGAAAAGGACTGTGGCATTACAACTTAAACCTTACATGTTTAAGTCAGGTCGACTTCGAGTACCTGCACCATTCGGAAGAGCTAATGGGATCAAGGAAGCGGGAAAGATAACTATAGTGAACAAAGATGGCGTGGAGTGGAAGTTACATCTAGGTAACATGAAGGGAAGTGAGCTATTCTACATTAGAGGCTTAAGAGATTGCTTTGCAGCCAATGGGATAAAGAAAGTTGGTGATTCCTTTACACTAGAGGCCATCAGAGGAGGAGCTAATCCTATTCTCAAGATCAGCTCCAAGGAAGCATCATTTGATGGCTATAAGACTCCACAGCGAAGGATGATTCAAGTGTCACGAGCTGAAGAAGAAAAGGAAACTAGAGTACAAAAGAAAGCTCGAGTTTCTGCAGAAGGAGGACCATCATCTCAGCGCACTAGGGCATCAAACAGATCAAGTGCTGGTCCCAAAAGTTTGCAGGGCAAGCAACCTCTTCAACCATGCTCAATCTCTGATCAGGTAACAAAGGTGAAGCAGAGTGTTGTGGATGCTTTAACCGATGTAAGACAGTTTCGGTCAGAGCTCGAGATAAAGGAACGTAATCTAGAAGCTGCGCTACTGGAAATTGATGTGTTAGAGGAAAAGATAATGGGTATCAGCAAACTCTTCAACATCAATCAAGTCGAAAGCATGAGATGA
Protein Sequence:
- >RrC282_p3|Raphanus_raphanistrum|B3|RrC282_p3
MVKKASLFSPATPHFFQPFLLGSKSHLNIPVKFFSEHIEGKHEGKTVTLRSDALEETWKVKMEGQRLTHGWKEFVEAHVLGVGDFVVFRHERDMLFHVTALGSDCCEIQYTPSGSRRQEDEEESVEIERSAKEVEKNLTKFVKLTPTSTSFETGRQHLPASFTRVNGLIKPGKIILVDKKGAEWVMELKVLKINGSMYMFIMSRNGWRIFCGVNEVRAGESLTLELIRGGASPMLKFCSKMEQPPFEAEARAYKRAKWSQEIREKTAEQGEPSHRTRVSKETNAYQENLQDKQPCSVSDLLMTKVKDSVVSTLTSIRRFREELKTKEQELEDSLQEIKNLVMASSTKKPIFIIDLSGQNSNPLIPDSFVLNHLKGNVQSTKLMKLTSDASDRTWEVELDGQRFARGWKHFCDHHCIRNDDVLSFRHDGDMVFHYLPSKFARSNGLNNRQCEIDLRNEHGKSWTLDLRHNKTTGQSFVRNGWTNFCKLNGIKAESFCRFKLVQNGRKPVLQLCPNTEVGEIESEDCSDPASMNQKRTVALQLKPYMFKSGRLRVPAPFGRANGIKEAGKITIVNKDGVEWKLHLGNMKGSELFYIRGLRDCFAANGIKKVGDSFTLEAIRGGANPILKISSKEASFDGYKTPQRRMIQVSRAEEEKETRVQKKARVSAEGGPSSQRTRASNRSSAGPKSLQGKQPLQPCSISDQVTKVKQSVVDALTDVRQFRSELEIKERNLEAALLEIDVLEEKIMGISKLFNINQVESMR