Information report for PSME_00038749-RA
Gene Details
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Functional Annotation
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0008284 — Biological Process — positive regulation of cell proliferation
- GO:0009733 — Biological Process — response to auxin
- GO:0010116 — Biological Process — positive regulation of abscisic acid biosynthetic process
- GO:0010262 — Biological Process — somatic embryogenesis
- GO:0010373 — Biological Process — negative regulation of gibberellin biosynthetic process
- GO:0048573 — Biological Process — photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >PSME_00038749-RA|Pseudotsuga_menziesii|B3|PSME_00038749-RA
ATGGCGCAAGGAGAAAAGGGGCAAACAGGATTTCAGGCTGGATCACAACAACACTACCATTCGCCTCAGGATCCTCCAGAATGGAACAGCAGTAGCAATTTTTACACGGTCTCATGGACTTCTTGCCAGCAGATGAATGAGTCAGATAAGGACAAGACCTCTTACGATGAAGCTGCAGCACTGAGCGAGATTTTGCAGGAATGGAACGCGGACGAGGCTATTGATTTTACAGGAATGGAACGCGGTACATGTGCTGATTATCCTCAACTCTGGGATCGATCCTCCTTGTTGGTATCTCCTATCAATCATTGTACTAGCAGCGTTGAAAGTTCAGAGGGTGTAGGAACATTGGGTATTACGTTTATGCCATCTTTTCAGAGCAATATTGCATCTAGGGATAACCAACAAGCTGGGTTTGAAGGCAGTTACACAAACTTGCAAGGGAAGAGAAGAATGACATTCCCATATATTCCAGATCCAGGTTTCGGTTTTCTCCCCACAAGAGGCAGCAGCATCAGCTCTGCAAGTCACCTAAATACTTCTATACCTATGGGCCATCACACTAACAACGCCATGGATAAAAATAATATTTCCACCGCCAGCAGCAAGAACAACAGCATAGTTCCAACAGCTACAGACAGCTTGTGGGAGTCTATTGGCGAGATAGAGAAGAGCATGTATTTTCATAGTACATTTGACTGTTGTATTGGATGTGCTTCTGCAGCTGGTGCAGCACAAAACAGAATCCCTCACCAACCTGAGAAGTCTATGTTTCCACCTTTATATATGTGTAAACCTCAGCAGCAGCATAGCCAGATAGCCTGTACTAGCATGGAAAATGGATACAATTTTAATTGGAATGGAAATTACTTTAATGCTTATGATACGCTGAGCAGGTCTTCTTCTGAATCCGTGATGTGGTTTGTTCCAAACCCCTTGACTCCGACTAGAGATATCCTTCCTTCTGTACAGGTTAAGGTAGAGGAAAAGCAGAACGTTGTTTTGAATAATGATACCATCAATCAATCGACCCCTTTGGTATTCGACTGTTCTGCAAATGTTCGGGCTATTCGTAAGAGGCGTAATATGTGTAGGAAGCGACGGTGGAACTTCGATGGCCATACATCCTTCGAAACCCTAACACAAGGTTTTCAGTCTGAGACACCGCTAGCTACATGGGATTCTTTCTCTCTTACAGTTGGAACGTCTAACGTTGCCTCTGCTACTGGTCGCGCGAAACTCCACAAGCCTCAAGGACTCCATGAACGCGGCGCTGCAGCTCCTCCTGATGATCCGGACAGTAATGGAAAGGATTATAGGACCACGAATCTGAAATTTCTTTTCCAAAAGGAGTTACGGAACAGTGATGTGGGAGCTCTCGGAAGAATAGTACTTCCCAAGAAAGAGGCAGAGACAAATCTTCCAACACTAACTGAAAGAGAAGGAATGCAGCTATGCATGGAAGACGTGCATTCTTCCGATAACTGGACCTTCAAATACAGATTTTGGCCAAACAACAAAAGTCGAATGTATGTGTTGGAAAACACTGGTGATTTCGTCAAAAAATATGATCTTAAATTTGGAGATTTTATTATGTTCTATAGAGATGAAGAAAATGAGAAATATATAGTGAGAGCCAAAAAGGCTGAGATTGAACGAATGATAACTTCAGGGAATTCAGCTGATCAAACTATGATAACTTCAAGAAATCCAGTTGATCAAACTGGGCCTTACTCCTCTCCAACTTTGCTTGAGGAGAGAATCAATCAGCAATCAGCGAGTGACAAAGAGAACGAGGTGAGTTGTGAATCACCACATGCAAGTGGAAATAGTGTCTCTATTGACGATAGAGAAATTGCCCTAGTTACTGTAGAAGATATATTTTCTAAGGAATTCAACATAGAGTTTCCTCCTGACATTGCCGATTCGGTTCAACTCGAATCCATCCCTAGTTTTGGCTCGGATGAGATATCCCTGGAAGATTTTATGAACTAG
Protein Sequence:
- >PSME_00038749-RA|Pseudotsuga_menziesii|B3|PSME_00038749-RA
MAQGEKGQTGFQAGSQQHYHSPQDPPEWNSSSNFYTVSWTSCQQMNESDKDKTSYDEAAALSEILQEWNADEAIDFTGMERGTCADYPQLWDRSSLLVSPINHCTSSVESSEGVGTLGITFMPSFQSNIASRDNQQAGFEGSYTNLQGKRRMTFPYIPDPGFGFLPTRGSSISSASHLNTSIPMGHHTNNAMDKNNISTASSKNNSIVPTATDSLWESIGEIEKSMYFHSTFDCCIGCASAAGAAQNRIPHQPEKSMFPPLYMCKPQQQHSQIACTSMENGYNFNWNGNYFNAYDTLSRSSSESVMWFVPNPLTPTRDILPSVQVKVEEKQNVVLNNDTINQSTPLVFDCSANVRAIRKRRNMCRKRRWNFDGHTSFETLTQGFQSETPLATWDSFSLTVGTSNVASATGRAKLHKPQGLHERGAAAPPDDPDSNGKDYRTTNLKFLFQKELRNSDVGALGRIVLPKKEAETNLPTLTEREGMQLCMEDVHSSDNWTFKYRFWPNNKSRMYVLENTGDFVKKYDLKFGDFIMFYRDEENEKYIVRAKKAEIERMITSGNSADQTMITSRNPVDQTGPYSSPTLLEERINQQSASDKENEVSCESPHASGNSVSIDDREIALVTVEDIFSKEFNIEFPPDIADSVQLESIPSFGSDEISLEDFMN