Information report for PSME_00019535-RA
Gene Details
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Functional Annotation
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G06710, AT3G09060
- Arachis hypogaea: arahy.Tifrunner.gnm1.ann1.8Z4KH7, arahy.Tifrunner.gnm1.ann1.HPMJ5J
- Brassica oleracea: Bol041075
- Daucus carota: DCAR_016546, DCAR_015659
- Glycine max: GmPPR576
- Lotus japonicus: Lj1g0015996
- Lupinus albus: Lalb_Chr07g0185941
- Oryza sativa: TCD10, YSA, FGR1;OsNPPR1, Rf1a;Rf5, Rf4;PPR782a
- Triticum aestivum: Rf3;RFL29b, Rf3, Rf1;RFL77, Rf1
Sequences
CDS Sequence:
- >PSME_00019535-RA|Pseudotsuga_menziesii|B3|PSME_00019535-RA
ATGGTTAATCCAGAGCATTTATTTGACAAAGAGGCGACTCCGAGCGATGTTGGAAACTTGAATAGATTGGTGGTTCTAAAACAGCATGCAGAGCACAAATTCTCCCCGGAATCACAAATCAATGATAGAGATGAAACTCTTGTATTTGTTGATGAGAACAACAAAGAATGGGAGTTTATGTACTCATTTTGGAAGAGCAGTCAAAGCTACGTCCTGACTAGGGGATGGAGCATCAATTGCATGCTGGAGATGTTGTTTCCTTCCAGAGGTGGAGCCAATGGCAAGCTCTATATCAATGTTTGGTTACTAGACATGGGAAATGAAAGATTTATCTGTGAATCTGTGTACGGACTTCCTGATCTGTCAAAGATATCTGAAATCTACTATGGCTTCAGATCAGAACAACCTCCAACAAGTGCAATGTTTCACAGAAAACTGCAACAAGAAATTCTATATCAACTCAGCCCGCCTGAGGATCAAACCATCTGCTTTTACGCAATTTTCAGTAACTACACAAAGGTTGTATTGATGTGGGGAAAATGCATCAGGGCTGATTCATTTTGTTTTACATACTATATTGATTCTGATGAGGTTACCTATGGTATGATGGTAGATGGGTATTTCCAAAAAGGCAAAATAGATAAATTATTTAGCCTACTTGAAGAAATGGAAACGAAAGGGGTTTTGGTTACTCTCATCACTTACAATGCTCTTATAAATGGGTTGTGTAAAGGAGGCAAGATGATTGAAGCAAGTACTCTGTTAAAAGAAATCTCAGTGAGTGGTTTGGCTGCCGACAATGTGACTTATAGCACCCTGATGGATGGGTACTGCAAGGGAGGAACTGTGCTGAGAGCATTGGATGTTTACAAAGAAATGGAGGCAAGAGGAATTGAGCCAGATGTCATCACTTGTAACGTGCTTATCAAAGCACTTTGTATGGCTGGTCATTTTCGGGAAGCTACTCATGTATTCAAGTGGATGCCTCTTAGAGGGTTGGATCCCAATGTTGTTACTTTCTACATTCTTATCGGTGAATACTGTAAAGCAGATAAGATAGAGGAGGCTTTGGCATTCTCGGAAAAACTGCAAAGACGTGGTGTTATGCCCAACATTTCTAGTTACAATTCAGTTATCAATGCCTTTTGTAAGAAAGGTAGGATATCGGTTGCAAGCAACCTCCTTAAATATTCCTTGGACAAAGGTTTAATTCCATATGTGATTACCTACAGGGCTTTGATTAAGGCACATTCTAAGGCAGGAAATAAACAGGAGGCCTCTGAACTTCTTGATAACATGATAGGTTGTGGAATTGTGCCAGACGACTCTCTCTATAACACTGTCATTGACAGACTTTGCAATCAATGGAAATTTGATACTGAAAGGAAAGGAATGCTCCCAAGTATTAGCAGTTACATGTCACTTATCAGAGTACTCTTAAAAAATTTCAGAAAGGAGGAGTTTAATGAGATTATGAACAACACCTATGTAAAAGAATTGGCTTCTGATGTTAGAACTTGCAATATGTTGATTGATTGTTTATGCATGGAACATGCAGATTTTGTCATGAATTTGTATGATAGAATGGAGGTGAAAGGTGTTGCACCTAATGCTTCTACATACAATGCTGTCATTGGTGGACTTTGCAAAGTAGGAAAGGTAGATATGGCATTGAAGATGCATTTGAGAATGCAGAAAATTGGTTTTCTGCCTGTTATTGAAAGCTTCAGCACCCTTATGAATGGTCTTTGCAAGAAGGGCAGTTTGGAAGAGGCTAATAATATTTTTAAACTAATTCTCAGATTTACAATGATAATTTCAAACTGTGAAAGGGGATTCATAAAGGGAGCCTTAAAACTGCATTATGAAATGCAAGATAATTGGTTATTACCAGCGCTGGAAACTTATCACTCGCTTATTTATAGACTTTGCAAAGAAAGGGACACAAATGGAGCTCTAACAATTTATAATGAAATGGATGCCAAATCTATGTTTCCAACTGTCTCTAGTTGTTCAGTTGTCCTTGATCTCTTATGCAGAGAAGGGAGGGTGAAAGAATCATGCAAGATTTTAAAGGCAGCATTGAAGAAGGGAATTGTGGCAGATGAAGTTGTTTGTGGAAAAGTAATTTATTGCCTGTGCAGAGAAGGTTGTTTGGAGGAAGCTTTAGAACTATGCAAGGAAATGGAATTAAAAGGTGCTATGCCTAATGAGGTCACATATAATTCAATAATTGATGTGATTTGCATTGAAGGCCGCCTCGTAGAAGCTTTCAGGTTATTTGATGCTATGGAGAGAACAGGTGTTAGTCCCACTGTTACCACTTACTCGAAACTCATACGTGGTCTCTGTAAGGAAGGCTATTTAGAGGATGCAGAGGAGATCTTGAAGAAATTGTTAGCCATGGGCCTTGTCCCAAACATCAATATTTACAATCTCCTGATTTCTGGATATTGCAAGAAAGGAAAAATTGAGGAGGCATCAACTCTTCTCTTTGAAATGGAGAAGTGGAGTATTCTGCCAGATGGTTTTATGTTTGAGTCACTGATTAAAGGGCATTGCAAAATATGCAATATGGAGGTAGCTCTGACACTGTTTCATGAAATGGAAACGAGAGGAATTGCAACAAATCTCTTTTGCTACACCAACCTTATTAATGGGCTTTGCAGTAAAGGCAGGATGGAAGAAGCAAGTAAACTTGTAGAAGAACTGCTTGAGAGGGATTTAGTTCTTGGCATCAATACTGACAGTAGATTATACTCTGAATATTTTAGAAGATTGAATTCTATGGGAACTGATAATTTGTTTGTTGGGCCAGAGCTTGATATCTCGTTTGTTGATTTCATCAAAAGGCTTTACCATGAAGGAAAGATACAGGAAGCAACAACTATATTAAGGGAATTGGAATTAAAGAATCCAGCTTCTGGTATTTCAAGCTGTACTGTGCAACTTGATAGGTCAGTCAATGATGATGACATTGATTCAACTTCCATGCTGACAGCTAATGCAGATGAAGAAATTTGGAAGGAGGTTTTGGCCACTCATGATATGGAATCTATCATCAAGCTTTGTAAAGAAGGTAGAATGCAAGATGCATTGATGTTTTATGATGAAATGATTAAAACGGGGCTAGTGCCAAACTTTAAGACTTTTAGTGTTCTCATTAGGTCACTTGACACAAATGATAAGCTGCAAGAAGCAAACAGGGTAATGAAAGAAATGCTAGTTACCTATGGCATCATGGTAGATGGGTATTTCCGAAAAGGCAAACTAGATAAAGTATTTAGCCTGCTTGAAGAAATGGAAACGAAAGGGGTTTTGGTTACTCTCATCACTTACAATGCTCTTATAAATGGGTTGTGTAAAGGAGGCAAGATGATTGAAGCAAGTACTCTGTTAAAAGAAATCTCAGTGAGTGGTTTGGCTGCCAACAATGTGACTTACAGCACCCTGATGGATGGGTACTGCAAGGGAGGAACTGTGCTGAGAGCATTGGATGTTTACAAGGAAATGGAGGCAAGAGGAATTGAGCCGAATGTCATCACTTGTAACATGCTTATCAAAGCACTTTGTATGGCTGGTCATTTTCGGGAAGCTACTGATGTATTCAAGTGGATGCCTCTTAGAGGGTTGGATCCCAATGTTGTTACTTTCTGCATTCTTATCGGCGAATATTGTAAAGCAGATAAGATAGAGGAGGCTTTGGTATTCTGGGAAGAACTGCAAATACTTCGTGTTATGCCCAACATTTCTAATTACAATTCAGTTATCAATGCCTTTTGTAAGAAATGTAGGATATCGGTTGCAAGCAACCTCCTTAAAGATGCCTTGGACAAAGGTTTAATTCCAGATGTGATTACCTACAGGGCTTTGATTAAGGCACATTCTAAGGCAGGAAGTAAACAGGAGGCCTCTGAACTTCTTGATAACATGATAGGTTGTGGAATTGTGCCAGACGACTCTCTCTATAACACTGTCATTGGCAGACTTTGCAATCAATGGAAATTTGATACTGGTATGAAACTCTACAATGAAATAGAAAGGAAAGGCATGCTCCCAAGTATTAGCAGTTACATGTCACTTATCAGAGTACTCTTAAAAATTTTCAGAATGGAGGAGTTTAATGAGATTCTGAACAGCACCTATGTAAAAGAATTGGCTTTTGATGTTAGAACTTGCAATATGTTGATTGATTGTTTATGCATGGAAGATGCAGATTTTGTCATGAATTTGTATGACAGAATGGAGGTGAAAGGTGTTGCACCTAATGCTTCTACATACAATGCTGTCATTGGTGGACTTTGCAAAGTAGGAAGG
Protein Sequence:
- >PSME_00019535-RA|Pseudotsuga_menziesii|B3|PSME_00019535-RA
MVNPEHLFDKEATPSDVGNLNRLVVLKQHAEHKFSPESQINDRDETLVFVDENNKEWEFMYSFWKSSQSYVLTRGWSINCMLEMLFPSRGGANGKLYINVWLLDMGNERFICESVYGLPDLSKISEIYYGFRSEQPPTSAMFHRKLQQEILYQLSPPEDQTICFYAIFSNYTKVVLMWGKCIRADSFCFTYYIDSDEVTYGMMVDGYFQKGKIDKLFSLLEEMETKGVLVTLITYNALINGLCKGGKMIEASTLLKEISVSGLAADNVTYSTLMDGYCKGGTVLRALDVYKEMEARGIEPDVITCNVLIKALCMAGHFREATHVFKWMPLRGLDPNVVTFYILIGEYCKADKIEEALAFSEKLQRRGVMPNISSYNSVINAFCKKGRISVASNLLKYSLDKGLIPYVITYRALIKAHSKAGNKQEASELLDNMIGCGIVPDDSLYNTVIDRLCNQWKFDTERKGMLPSISSYMSLIRVLLKNFRKEEFNEIMNNTYVKELASDVRTCNMLIDCLCMEHADFVMNLYDRMEVKGVAPNASTYNAVIGGLCKVGKVDMALKMHLRMQKIGFLPVIESFSTLMNGLCKKGSLEEANNIFKLILRFTMIISNCERGFIKGALKLHYEMQDNWLLPALETYHSLIYRLCKERDTNGALTIYNEMDAKSMFPTVSSCSVVLDLLCREGRVKESCKILKAALKKGIVADEVVCGKVIYCLCREGCLEEALELCKEMELKGAMPNEVTYNSIIDVICIEGRLVEAFRLFDAMERTGVSPTVTTYSKLIRGLCKEGYLEDAEEILKKLLAMGLVPNINIYNLLISGYCKKGKIEEASTLLFEMEKWSILPDGFMFESLIKGHCKICNMEVALTLFHEMETRGIATNLFCYTNLINGLCSKGRMEEASKLVEELLERDLVLGINTDSRLYSEYFRRLNSMGTDNLFVGPELDISFVDFIKRLYHEGKIQEATTILRELELKNPASGISSCTVQLDRSVNDDDIDSTSMLTANADEEIWKEVLATHDMESIIKLCKEGRMQDALMFYDEMIKTGLVPNFKTFSVLIRSLDTNDKLQEANRVMKEMLVTYGIMVDGYFRKGKLDKVFSLLEEMETKGVLVTLITYNALINGLCKGGKMIEASTLLKEISVSGLAANNVTYSTLMDGYCKGGTVLRALDVYKEMEARGIEPNVITCNMLIKALCMAGHFREATDVFKWMPLRGLDPNVVTFCILIGEYCKADKIEEALVFWEELQILRVMPNISNYNSVINAFCKKCRISVASNLLKDALDKGLIPDVITYRALIKAHSKAGSKQEASELLDNMIGCGIVPDDSLYNTVIGRLCNQWKFDTGMKLYNEIERKGMLPSISSYMSLIRVLLKIFRMEEFNEILNSTYVKELAFDVRTCNMLIDCLCMEDADFVMNLYDRMEVKGVAPNASTYNAVIGGLCKVGR