Gene Details:

  • Gene ID: Pp3c11_21940V3.1.p
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Physcomitrella patens
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_024388645.1  — B3 domain-containing transcription repressor VAL1-like isoform X1
  • TrEMBL:  A0A2K1JVP0  — A0A2K1JVP0_PHYPA; Uncharacterized protein
  • STRING:  PP1S31_242V6.1  — (Physcomitrella patens)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0010030  — Biological Process — positive regulation of seed germination
  • GO:2000034  — Biological Process — regulation of seed maturation
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Pp3c11_21940V3.1.p|Physcomitrella_patens|B3|Pp3c11_21940V3.1.p
    ATGGCGATGGACAACAAGATCGAGTGTCGAAAGGTTTGCTGGAACTCCAAGTGCGGCACCAGCAGCTCCACCACCTGGCGCCCTGGCTGGATTGCGCGCAACGGGCGCACTGCCGAGCTCTGCGATTACTGCGGACTAGCTTATCAACAATCTTCCTTTTGTGAGACGTACCATAGCGACGATGCTGGATGGAGGACATGTAATTTCTGTAAAAAGCGTGTGCACTGTGGTTGTGTTGCATCTGCCAACGGAATAGTACTACTTGATAAAGGTGGAGTAGAGTGCATTCGGTGTGCCACAGCCCATGATTCGGCTGGTTCTATCTCCTTGGTTGGTAAACATGGACAACAGCTACTCTCTCCAGCGGTACCTTTGGAGAGCGGTAAAGTGGTCGATCCAGCTGTTAGAGGCTGGTGCGAGGGATATGGAGCTGCATTGGCTGTATGTCAAGTGGACGGGGGAGCATGGCCGCCCTCATCTGCTGCAAGGACATCTTTGAGCCCTCCTACTGGACTGGCTCGACCTTGGAGTACTCCGGAAACTGATATATCAGTTAAGAGCAAGGATGGTGTAGACTCAGCATCACGAGAGCAAATAACGTTGGAGGTGATGGACTGCGGTGGGGAGGGTACTGAAAGTGACAAAAATGTCAGTCTAGATCGAACGAAGGCTGGAGGAGCAGTAGGTGGTGGTGCTGCTGCTGGTAGCTCACAGTCAGCAGGACAGGGATCACTCCGTGTAGCGCGGCCACCTGGAGAGGGAAGGGGTCGCAACCAGTTGCTACCTCGTTATTGGCCTCGAATAACAGACCAGGAGCTGAAGCAGATCAATTCTGGAGACACACAAACTACCATCACTCCTCTGTTCGAGAAAATGCTGAGTGCCAGTGATGCCGGTCGGATTGGTCGTTTGGTGCTTCCAAAAGCATGCGCCGAGGCGTACTTTCCACCCATCCACCAGCCAGAGGGATTACCCTTGAGGATTCAGGATGTCACTGGGAGGGATTGGGTGTTCCAGTTTCGCTTCTGGCCCAACAATAACAGCCGAATGTATGTGCTTGAAGGTGTCACCCCATGCATTCAATCGATGAAGCTTCATGCAGGGGATACAGTAACATTCAGTAGGCTTGAAGCCGATGGGAAGCTGGTGATGGGTTATCGCAAGGCTCCAACCTCTCTCTCCTCCCAGGATGCTGGTGCCACTCGGGTTGGTCCCAACGCTAGTAATGGCTTATCAAACCCAAGCAGCGCGGTCATTCAAACAGCAGATGGATGGGCCTCAAACGTGGGAGCACCCAAATCAAAAGAAAGCGGCGTTAGTATTGGTCAATTGTGGTCCTCGCAGATGGATAGGAAACGTGGGCGGCCATTGGGCTCTAAAAGCAAGCGCCTTCGACTAGATAGTATTGATTCTATGCTTCTCAAGTCCAATTGGGAGGAGGCTCAGGAGCTACTGCGTCCTGCTCCCTCTGCTTCTTCTACCGTCATAACAATTGACGGTCACGAATTTGAAGAATATTCGGAACCACCGGTTCTTGCGAAACGAACGTTTATAACCAAAGCGCCCTCCGGGGCTCAGGAACAGTGGGCTCAATGTGATGACTGCGGGACATGGCGTCGTGTACCTGTTGATGCTTTTGTACCTGCACGGTGGTCGTGCTCACAGAATAGTTGGGATCAAACAAGAGCTCAGTGCAGTGCTGCTCAAGAAGTGAGCAGTGACAAATTAGAAGTGCTACTGGGTCCTGGACCCACTTCAGAGGGTGGGAAGCAGGAATATGCACCTAAGGTAACCCCTACTAGCAGGGAGGAAAATGTCTCTACCACATCAGCTGCGGCAGGCTTGGACACTTTGGCCCAGGCAGCATCAACATCTCTGAGTCCTGTGCGAACCACCAAGCACCCAAGGCATCGCCCAGGATGTACCTGTATTGTATGTATTCAGCCCCCAAGCGGCAAGGGGCCTAAACACAAAGCGTCCTGTATCTGCAATGTTTGTGTGACAGTGAAGCGTCGCTTCAGGACGCTTATGCAACGCCGTAAGAAGCGGCAATGTGAGCGAGAGTTTGAAGCGTTCCGTAATAAGCGAGAATGGCAGGAAGAAGATGCTTCCGAAATTGCTGATATTGGTAGAGCTGGAACAGTAGACGCGGCAAACGATGTCGATGATGACCTTCCTACACCACCAGTTTGTTCCAGAGATGGGGTTTCTGAGGATGGACCTGTTAAGGGAGCCATTGACTTGAATATTCAACCCGATCATGAGGAGCGCGTAAGTATGGTACGCTTGCTTCAGGATGCACATCTACCCCTATCTGCTTATCTACATCAGCAGCGGCTTTCTTCTCTTTATGTTGGAGATCTAGTTTCAGATCATGTCAGTAATGATGCCACTAGCAGCCACGAGGATACTCTCTCAGAATCTTCTAGCAAGGCTGAGGCAGATAATGAGCTTGAGGTGGCTGGTCATGTACGACATGAAGCTCAGCGAACTCAGACATCCCTTGGATATGTAGAGCAACCAAACTTTGTGGAGAGCTGGGATGCAAGAGGAGTCAAGCCCTCGGAGTTCTCAGGAGATTCAGTCCACTCTAGCTCATCAAAATTTGAGTTTACCATGATGAATAATGTTGCTGCATCGTCCGCAAAGAAGCATGTAACTGGAGCAGGTCGTGGACGGCAAATTTGCATAGGTTGTGGTGAACCAATTGGTTCCGCAGCAAAGGTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGGGTGCCCCTTTAG
Protein Sequence:
  • >Pp3c11_21940V3.1.p|Physcomitrella_patens|B3|Pp3c11_21940V3.1.p
    MAMDNKIECRKVCWNSKCGTSSSTTWRPGWIARNGRTAELCDYCGLAYQQSSFCETYHSDDAGWRTCNFCKKRVHCGCVASANGIVLLDKGGVECIRCATAHDSAGSISLVGKHGQQLLSPAVPLESGKVVDPAVRGWCEGYGAALAVCQVDGGAWPPSSAARTSLSPPTGLARPWSTPETDISVKSKDGVDSASREQITLEVMDCGGEGTESDKNVSLDRTKAGGAVGGGAAAGSSQSAGQGSLRVARPPGEGRGRNQLLPRYWPRITDQELKQINSGDTQTTITPLFEKMLSASDAGRIGRLVLPKACAEAYFPPIHQPEGLPLRIQDVTGRDWVFQFRFWPNNNSRMYVLEGVTPCIQSMKLHAGDTVTFSRLEADGKLVMGYRKAPTSLSSQDAGATRVGPNASNGLSNPSSAVIQTADGWASNVGAPKSKESGVSIGQLWSSQMDRKRGRPLGSKSKRLRLDSIDSMLLKSNWEEAQELLRPAPSASSTVITIDGHEFEEYSEPPVLAKRTFITKAPSGAQEQWAQCDDCGTWRRVPVDAFVPARWSCSQNSWDQTRAQCSAAQEVSSDKLEVLLGPGPTSEGGKQEYAPKVTPTSREENVSTTSAAAGLDTLAQAASTSLSPVRTTKHPRHRPGCTCIVCIQPPSGKGPKHKASCICNVCVTVKRRFRTLMQRRKKRQCEREFEAFRNKREWQEEDASEIADIGRAGTVDAANDVDDDLPTPPVCSRDGVSEDGPVKGAIDLNIQPDHEERVSMVRLLQDAHLPLSAYLHQQRLSSLYVGDLVSDHVSNDATSSHEDTLSESSSKAEADNELEVAGHVRHEAQRTQTSLGYVEQPNFVESWDARGVKPSEFSGDSVHSSSSKFEFTMMNNVAASSAKKHVTGAGRGRQICIGCGEPIGSAAKVCRRCGTCTAFGKKKRGVPL*