Gene Details:

  • Gene ID: PH01013505G0010
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Phyllostachys heterocycla
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_025881052.1  — auxin response factor 11-like isoform X1
  • Swissprot:  Q01K26  — ARFK_ORYSI; Auxin response factor 11
  • Swissprot:  Q8S983  — ARFK_ORYSJ; Auxin response factor 11
  • TrEMBL:  A0A0P0WG28  — A0A0P0WG28_ORYSJ; Auxin response factor (Fragment)
  • TrEMBL:  A0A3L6PYC8  — A0A3L6PYC8_PANMI; Auxin response factor
  • STRING:  LPERR04G24160.1  — (Leersia perrieri)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >PH01013505G0010|Phyllostachys_heterocycla|B3|PH01013505G0010
    ATGCAAGTGCTCTCTGTGATTCCATTAGGTGCAAAGAAGGTGATCAACTCGGAGCTCTGGCACGCGTGTGCCGGGCCGCTCGTGTGCTTGCCGCAGCAGGGGAGCCTCGTGTACTACTTCGCCCAAGGGCACAGTGAGCAGTGCAAATTACGGCTTGATCCATGGAATGCTGAAGTTTTTCTCTGGCAGGTTGCGGCTACCACTAGAAAGATACCGAATTCTCACATTCCGAACTACCCAAATCTCCCGTCTCAGTTGCTGTGTCAAGTTCACAACATCACTTTGCATGCTGACAAGGACACTGATGAGATTTATGCACAGATGACTCTTCAACCAGTAAATTCTGAAAGTGATGTGTTCCCAATTCCAACTCTTGGTACTTATACCAAAAGCAAGAATCCCGCTGAATATTTCTGCAAGAATTTGACTGCAAGTGATACGAGTACACATGGTGGTTTCTCGGTGCCACGAAGGGCTGCAGAGAGGTTGTTCCCACAACTGCTCATAGAATACGTTTTGGACCCACAGGATTACTCAATGCAACCTCCTAATCAGGAGCTTATTGTTCGAGATTTGCAAGATAACCTGTGGACATTCCGTCACATTTATCGTGGACAGCCAAAGCGACATCTTCTAACAACTGGATGGAGCCTCTTTGTTGGGGCGAAAAGGCTTAAAGCAGGGGATTCTGTCTTATTTATCAGATGCTGTAATGATTATGAACATTTATGTTTTACATTGTACAACATATTTATAACTTCGAACACCCATTTTGAAAATCCTGGATCCGCCACTGCGAGGGAGATGGGCATGAGGCAGAGGCCCTTCCCCTGC
Protein Sequence:
  • >PH01013505G0010|Phyllostachys_heterocycla|B3|PH01013505G0010
    MQVLSVIPLGAKKVINSELWHACAGPLVCLPQQGSLVYYFAQGHSEQCKLRLDPWNAEVFLWQVAATTRKIPNSHIPNYPNLPSQLLCQVHNITLHADKDTDEIYAQMTLQPVNSESDVFPIPTLGTYTKSKNPAEYFCKNLTASDTSTHGGFSVPRRAAERLFPQLLIEYVLDPQDYSMQPPNQELIVRDLQDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRCCNDYEHLCFTLYNIFITSNTHFENPGSATAREMGMRQRPFPC