Information report for PH01001094G0220
Gene Details
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Functional Annotation
- Refseq: XP_015646777.1 — B3 domain-containing protein Os07g0679700 isoform X1
- Swissprot: Q6Z3U3 — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
- TrEMBL: A0A453AP44 — A0A453AP44_AEGTS; Uncharacterized protein
- STRING: OMERI07G23470.2 — (Oryza meridionalis)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi1g17680.1.p
- Oryza sativa: OsVAL2
- Panicum virgatum: Pavir.2KG587300.1.p, Pavir.2NG636600.1.p, Pavir.2KG587300.3.p
- Setaria italica: Seita.2G432900.1.p
- Setaria viridis: Sevir.2G445900.1.p
- Triticum aestivum: Traes_2BS_5B00A8C50.1
- Zea mays: GRMZM2G158162_P03, GRMZM2G158162_P02, GRMZM2G158162_P01
Sequences
CDS Sequence:
- >PH01001094G0220|Phyllostachys_heterocycla|B3|PH01001094G0220
ATGGCGGGGATGGCTGCTGCTGCTGCGGCGGCGGCGGTGAAGAGGTGCATGAACGCGGCGTGCGGCGCGCCGGCTCCGTCGGCGGCGGGAGGGGAGTGGAGGAAGGGCTGGCCGCTGCGATCCGGCGCCTTCGCCGTGCTCTGCGACAAGTGCGGAACTGGGGAGCTTATCACCAAAAATCTAAACTACAGCGACGTGAAGATGCGTGCAACTTTATTTTGGAAATTGACCCTGATATTACTTTCAGTGATAGCGCTTGAGCAAAATCTCAGGGGGGCAAATATCGAAGCAAATTACCATCGGTTGGCATATGAGCAGCTTGTTTTTTGTGATATATTTCACCAAAAGGAATCTGGCTGGAGGGACTGCTCATTTTGTGGGAAGCACCTCCACTGTGGATGTATTGCTTCAAAGAACTCCTTTGATCTACTTGATAGCGGAGGAGTTCAATGTGTCAATTGCATGAAAAATTCAGGAGTTCAATCTGTTTCAAGTCAAGTGGCTCCAAAGCTTTTTTCATTACAAAATAATCAGAGACTCGAGTTATTGCCAGGTAGACCGTTGGAGCCACCCTCCCTTAACGCCGATGCCAGAAACGATGATATTGCTATTATTTCTAAGAGCAATCATCCAATTGTGGTAAAAAACATAGAAGCTGGGCAAAGCAGTAGCATTTTGAGGCAAAAAGAAATAGAGAATGGTGCAAGGCTGATTAAATGGGAACAACCAATTTTTAGTATTGGGGACATGGGAGGGATGCCTTTCTTAACTAGGACTCAAAGTGCATTAGAGTCTCCTCAATGTACTCGAAGAGATGACAATAAAGATCCAACAGCAGATAGCACAACAAGTGAATCACTTTCTGAGACATGTCTCAGCATGAGCTTGGGTATTGCTAATAACGGAAACAAGATGGAGGCTACTTCAACAGTGGAAAGACCTATTCTATCACCCACAACACCATTTGCTGAAGGAAGAGAACTTGCCACTACATTATCTCCATTTCAGCATGCACAAAGGGCTCGGCATTTTCTGACAAGACCACCAAGGGTTGGTGAAGGTGCTGCTTTTGATCCAACAAAAGATGCTCTTCCACATCTTCGTGTCGCGAGACCACCTGCCGAGGGAAGGGGCCGCAATCAATTACTTCCTCGTTCAAATTCCACCATTGTTCCACTGTTCGAGAAGGTTCTAAGCGCTAGTGATGCAGGCCGTATAGGACGCCTTGTTCTTCCAAAAGCATGTGCTGAGGCATATTTCCCCCCAATCTCGCAGCCAGAAGGTCGTCCCTTGACAATTCAAGACGCAAAAGGCAACGAATGGCATTTTCAGTTTAGATTCTGGCCAAATAACAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAGTCCTTACAATTACAAGCTGGTGATACAGTGACTTTTAGTCGGATAGAACCTAGAGGGAAACTTGTCATGGGCTTCCGGAAGGCCACAAATACTGTCAGTCTGCCAGACTCACAGATTTCAGCTATTGCAAATGGTTCCCTTCTCGGTGATACATTATTTTCTAGTACAAACGAGAACCTAGCAATAGTAAGTGGTTATTCAGGATTTCTTCAGTCCATAAAGGGAACTGCAGATCTCCATGCAAGCTCTCTATTCGATCATCATGTGAACTCAGCTGACGGGGATGTTAGTTGGCTTAAGACAGATAAATTCGGCGGCAGGCAAGATGAGGGGTCTTCACAGTTTTTACAAAAAAGAAGCCGTAATATTGGTTCCAAAAGCAGGAGGCTTTTAATGGATGCTGAAGATGCCTTGGAACTAAAGCTTACCTGGGAGGAGGCTCAGGAGTTGTTGCGCCCTGCTCCAACTGCAAAACCAACTATTGTGATGATTGAGGACTATGAATTTGAAGAATATGATGAACCTCCTGTCTTTGCAAAGAGATCAATTTTCACCATCCGTGCTACAGGGGAACAAGATCAATGGATTCAGTGTGACGATTGCTCAAAATGGCGTCGGTTGCCTCTTAATATTATTGTTGCCTCCAAGTGGACATGTGTTGACAACAAATGGGACCCAAAAAGCTGTTCCTGCTATGCACCTGAAGAATTAGCCCCCAAAGAGTTGCAAAGTATTCTTCAGCAGTACGAAGATATCAGGAGGCAAAGGAGCAGCTATGGTCTGAAGCAGAACATCCCCGAAATGGATGCAGCCAGCTTTGATGCCTTGGCCACTGCCGCAGTCTTTGGTGAGGTTGGAAACCAAGGAGCTGCTTCGGTTGCAATGACCACCAAGCACCCCCGGCACCGTCCCGGCTGCACTTGCATAGTGTGTATCCAGCCACCTAGTGGTAAGGGCCCGAAGCACAACCCCGCGTGCACTTGCAATGTGTGCATGACCGTCAAGCGTCGTTTCAAGACACTCATGATGAGGAAGAAACAACGGCAGTCCGAGCGAGAGGAAGCCGAAGCGGGCAAGAAGATCGCTTGGGTAAACAGAGATGAACCTGAGGGAAGTAACTTGTCGAGATCCCCACAGACACTGGACACTACTCGAGAAGGTGATGTGACCATGTTCGACAAGGTTGACATGAACAAGGGGCACATAGACCTGAACGTCCACCCTGCCGGCCGTGACGAACCACCCCTACCGGAGCAGCACGGTGGGCAGCCTCGGGTGAGCATGATCAGCCTCCTCAAGGTCGCGAACCGGCCCCTGGAGAACTACATGAAGCAGAACGGCCTCACGAGCCTGGCGGGAGAGCAAGGGAGCTCCAGTACGGCAACAGTTCCTCACGCCGCTCCGGTGGAGAGCGAAGAGCAAACTTCCAACGAGGGCCGTGTGGCATCGGTGGAGCCGGAGCGAGAGCCAGACAGAATGGCCGTCGACGAGGCCGGTGAGAATCAGGACAAGACCGACGACGACAGGGCCGCCGCCTGA
Protein Sequence:
- >PH01001094G0220|Phyllostachys_heterocycla|B3|PH01001094G0220
MAGMAAAAAAAAVKRCMNAACGAPAPSAAGGEWRKGWPLRSGAFAVLCDKCGTGELITKNLNYSDVKMRATLFWKLTLILLSVIALEQNLRGANIEANYHRLAYEQLVFCDIFHQKESGWRDCSFCGKHLHCGCIASKNSFDLLDSGGVQCVNCMKNSGVQSVSSQVAPKLFSLQNNQRLELLPGRPLEPPSLNADARNDDIAIISKSNHPIVVKNIEAGQSSSILRQKEIENGARLIKWEQPIFSIGDMGGMPFLTRTQSALESPQCTRRDDNKDPTADSTTSESLSETCLSMSLGIANNGNKMEATSTVERPILSPTTPFAEGRELATTLSPFQHAQRARHFLTRPPRVGEGAAFDPTKDALPHLRVARPPAEGRGRNQLLPRSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPLTIQDAKGNEWHFQFRFWPNNNSRMYVLEGVTPCIQSLQLQAGDTVTFSRIEPRGKLVMGFRKATNTVSLPDSQISAIANGSLLGDTLFSSTNENLAIVSGYSGFLQSIKGTADLHASSLFDHHVNSADGDVSWLKTDKFGGRQDEGSSQFLQKRSRNIGSKSRRLLMDAEDALELKLTWEEAQELLRPAPTAKPTIVMIEDYEFEEYDEPPVFAKRSIFTIRATGEQDQWIQCDDCSKWRRLPLNIIVASKWTCVDNKWDPKSCSCYAPEELAPKELQSILQQYEDIRRQRSSYGLKQNIPEMDAASFDALATAAVFGEVGNQGAASVAMTTKHPRHRPGCTCIVCIQPPSGKGPKHNPACTCNVCMTVKRRFKTLMMRKKQRQSEREEAEAGKKIAWVNRDEPEGSNLSRSPQTLDTTREGDVTMFDKVDMNKGHIDLNVHPAGRDEPPLPEQHGGQPRVSMISLLKVANRPLENYMKQNGLTSLAGEQGSSSTATVPHAAPVESEEQTSNEGRVASVEPEREPDRMAVDEAGENQDKTDDDRAAA*