Information report for PGSC0003DMP400025605
Gene Details
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Functional Annotation
- Refseq: XP_006350377.1 — PREDICTED: uncharacterized protein LOC102594229
- TrEMBL: M1B5P7 — M1B5P7_SOLTU; Uncharacterized protein
- STRING: PGSC0003DMT400037688 — (Solanum tuberosum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA02g06980
- Nicotiana benthamiana: Niben101Scf06916g01025.1, Niben101Scf01209g05011.1, Niben101Scf09698g01006.1
- Nicotiana tabacum: XP_016495501.1, XP_016495503.1, XP_016495504.1, XP_016480126.1, XP_016480127.1, XP_016483682.1, XP_016511083.1
- Petunia inflata: Peinf101Scf00053g05013.1
- Solanum lycopersicum: Solyc08g029090.2.1, Solyc04g015500.2.1
- Solanum melongena: Sme2.5_05116.1_g00002.1
Sequences
CDS Sequence:
- >PGSC0003DMP400025605|Solanum_tuberosum|B3|PGSC0003DMP400025605
ATGAGAAAACGCCGGCAAACAGTTGAGATGGCTCCTCAGTTCTTCAAGATTATCTTATCTCCTCATGCCTCTAAATTACATATCCCAGATGAATTTGTAATCAAGTATGGAGCCGATCTGCGTGATGTTGTGTTCCTTGAGGTCCCCACAGGAGCAATCTGGCAAGTTAAATTATTGCAAAATTCAAATGGCACCAAATGGCTTAACCACGGATGGAACCAATTTAAGGAATACTATTCAATTGCTATGGGTTACTTTTTACTCTTTCAATATAATGGAAACTCTCATTTCTCTGTTTTCATATTTGATTTAAGTGCTTCTGAGATTGAATATCTTTCTGGACCAAATGAAGATGATAATAATAATGCAAAAGTAGCACATCCAGTATCCCGCCCTAATTGTCTAGCAGAAAGGCAGGAGGTGAAGCTTGAGAAACCAGATGTGGAGGAGGATTTGACCTATGCAACACAAAAACATAAAAAGAAGGAGAAGAATTTGTACAATGAGCACTGCAATGAAGTACTACATCCTAACACTACCAAATACAATAAAAGGAAATATTCTCTCAACTTGGAGGCATCACATCGTAGGTATCCTCTACGAAGTAAACAGGTCAAACTTGAACAATCTAAAGCAAACGGGAGTCCTTCATATTCTGGAAAACAAAGACCTGCCACTTCACTATCCTTTCCAGGTATTCAGTCAGAAAGAAAAGAGTCTACCAGGGTGAAGCTTGAGAAAGCAAACTCGGAAGAGGATTTCTGTTGTGCTGTGCCAAAAGCAAAAAGGGGGGAGGGTAACATGGAGAAGCTTGTAAAACAAGATAGGCAACATAATATGTTTGATGAAGCACATAAATTTAAAGGGCACTGCAATGAAGCACCAATAGTGGATCCCTCAACATCGAAGATGACAACCACTAATCAGCATAGTAAAAAGAGAACTGCTACCAGTTTAGATGCATCAAATTGTCGATATCCACTACGAAGTAAGCAACTGAAAGATGTAAAGATTGAAAAAGGAGATGTGGAAGGGCGCTGCAATGAAGCACTGGTAGTGGATCCGTCAACATCTAAGGTTACAACCACTAATCAGCATAGTAAAAAGAGAACTGCTGCCAGTTTGGATGCATCAAATTGTCGGTATCCACTACGAAGTAAGCAACTGAAACAGGTGAAGATTGAAAAAGGAGATGTGAAAGAGCACTGCAACAAAATACCAGTGGTGGATCCCTCAGCAACTAAGATGACAACCACTACCCGACATCATGAAAAGAAAACTAGTGCCAGTTTGGATACGTCACATTGTAAGTATCCACTGCGAAACAAGCAACTGAAAGAGGTGAAGCTTGAAAAAACAAACGCAGAAGAGGATTTGCTTTATGTAGCACAAAAAGCAATGAGGAAGAAGGCTAATAATGTGAAGCTTGAGAAAGGAGATGTGGAAGAGCGCAGCAAAGTAGGGGATCCCTCAGCATCTACTACCACTAATCAACATAATGAAAAGAAAACTGCTACCCCTTTGGATGCATCACATTGCAGGTATCCACTACGAAGTAAGCAACACATAGAGGTGAAGCTTGAACAATGGGAAACAGGAGGGAATATGCATAACAAAACACCAAAAAATAAAGTAGTAGCAGATTCTCCATATTGTATAAGACAAAACCTTGGCCTTCCAGCATCCTCTCCAAGTTATCAGCCAGTCAGGGTGAAGCTTGAAAAACCAGACAATTTGTTTTGTGCAGCAGAAAAAGTAAAAGGGAGGGAGACCAACAATGTGAAGCTTGACACAGGAGACTTGGAAGGGAATTTGATTGCTGCATCTTATAAAGGAAAAGATTCCACAGCCTCTGAGATGACAGTACTTGGCAAGAAAAAGATGTTACCCTCGGAGAAGCACAATCGGGATATGTACTTCAATCCACACTTCACTGTTTCTATGCAGCCTACTTGTGTCTCTAGAAAGTTCCAATTGGATATACCTGTTGAATTTTTCAAGAAATGTCTCAATGAAGAGGAAACCATTGTAAATCTACGAGTTTCTAATGGGAGAAGTTGGCGTGCAAAGTTGTTAGACATTCAATCAAATTGTCCAAAGATGGAATCATCAGGTTGGAGGGACTTTGTGCTCGACAACAATTTAAAAGAGCATGATACTTGTGTCTTTGAGCTGATTGACGGCATTGAGCCAATGCTAGATGTGACAATTTTCCGAGCCACAACTCCCGTTTCCTGA
Protein Sequence:
- >PGSC0003DMP400025605|Solanum_tuberosum|B3|PGSC0003DMP400025605
MRKRRQTVEMAPQFFKIILSPHASKLHIPDEFVIKYGADLRDVVFLEVPTGAIWQVKLLQNSNGTKWLNHGWNQFKEYYSIAMGYFLLFQYNGNSHFSVFIFDLSASEIEYLSGPNEDDNNNAKVAHPVSRPNCLAERQEVKLEKPDVEEDLTYATQKHKKKEKNLYNEHCNEVLHPNTTKYNKRKYSLNLEASHRRYPLRSKQVKLEQSKANGSPSYSGKQRPATSLSFPGIQSERKESTRVKLEKANSEEDFCCAVPKAKRGEGNMEKLVKQDRQHNMFDEAHKFKGHCNEAPIVDPSTSKMTTTNQHSKKRTATSLDASNCRYPLRSKQLKDVKIEKGDVEGRCNEALVVDPSTSKVTTTNQHSKKRTAASLDASNCRYPLRSKQLKQVKIEKGDVKEHCNKIPVVDPSATKMTTTTRHHEKKTSASLDTSHCKYPLRNKQLKEVKLEKTNAEEDLLYVAQKAMRKKANNVKLEKGDVEERSKVGDPSASTTTNQHNEKKTATPLDASHCRYPLRSKQHIEVKLEQWETGGNMHNKTPKNKVVADSPYCIRQNLGLPASSPSYQPVRVKLEKPDNLFCAAEKVKGRETNNVKLDTGDLEGNLIAASYKGKDSTASEMTVLGKKKMLPSEKHNRDMYFNPHFTVSMQPTCVSRKFQLDIPVEFFKKCLNEEETIVNLRVSNGRSWRAKLLDIQSNCPKMESSGWRDFVLDNNLKEHDTCVFELIDGIEPMLDVTIFRATTPVS*