Gene Details:

  • Gene ID: PGSC0003DMP400025461
  • Gene Name: LOC102594206
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Solanum tuberosum
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_006346635.1  — PREDICTED: auxin response factor 2-like
  • Swissprot:  K4DF01  — ARF2B_SOLLC; Auxin response factor 2B
  • TrEMBL:  M1B5E7  — M1B5E7_SOLTU; Uncharacterized protein
  • STRING:  PGSC0003DMT400037454  — (Solanum tuberosum)

Gene Ontology:

  • GO:0008285  — Biological Process — negative regulation of cell proliferation
  • GO:0009734  — Biological Process — auxin-activated signaling pathway
  • GO:0009737  — Biological Process — response to abscisic acid
  • GO:0009911  — Biological Process — positive regulation of flower development
  • GO:0010047  — Biological Process — fruit dehiscence
  • GO:0010150  — Biological Process — leaf senescence
  • GO:0010227  — Biological Process — floral organ abscission
  • GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
  • GO:0048481  — Biological Process — plant ovule development
  • GO:0005634  — Cellular Component — nucleus
  • GO:0005515  — Molecular Function — protein binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >PGSC0003DMP400025461|Solanum_tuberosum|B3|PGSC0003DMP400025461
    ATGGCTACTTCTGAGAGTTGCCGGAATGCTACCGGCGCCGGAAAAGTTGATGCTGAGAAAGCGTTGTACACGGAGCTATGGCGAGCATGTGCAGGTCCGCTTGTGACAGTGCCATGTGAAGACGAGCTGGTGTTCTATTTCCCACAAGGTCATATTGAACAGGTTGAAGCATCAACAAATCAAGCATCAGACCAGCAGATGCCAGTATATAATCTTCGTTCTAAGATCCTCTGTCGTGTGATTAACGTCCTGCTGAAGGCTGAACCAGATACTGATGAGGTGTATGCACAAGTGACTTTGTTGCCAGAACCAAATCAAGATGAGAATGTGGTATCAAAGGAACCGATGCCCTCTCCACCACCACGATTCCATGTGCACTCTTTTTGTAAGACATTAACAGCCTCTGATACCAGCACTCATGGAGGATTTTCTGTCTTGAGACGGCATGCTGATGAATGCCTCCCACCTCTGGATATGTCTCGGCAGCCTCCAACACAGGAGTTGGTGGCCAAAGATTTGCATGCAAATGAGTGGCGCTTCAGGCACATATTCCGGGGCCAGCCTAGGAGGCACCTTCTTCAGAGTGGTTGGAGTGTCTTTGTTAGTTCGAAAAGGCTTGTTGCAGGGGATGCATTCATATTTCTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGAGTCCGACGTGCCATGAGACAGCAGGGTAATGCTCCATCATCAGTGATATCCAGTCATAGCATGCATCTTGGTGTCCTTGCTACAGCTTGGCATGCCATTCAGACGAAAACACTGTTCACAGTATATTACAAACCAAGGTAA
Protein Sequence:
  • >PGSC0003DMP400025461|Solanum_tuberosum|B3|PGSC0003DMP400025461
    MATSESCRNATGAGKVDAEKALYTELWRACAGPLVTVPCEDELVFYFPQGHIEQVEASTNQASDQQMPVYNLRSKILCRVINVLLKAEPDTDEVYAQVTLLPEPNQDENVVSKEPMPSPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNAPSSVISSHSMHLGVLATAWHAIQTKTLFTVYYKPR*