Information report for PEQU_06068
Gene Details
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Functional Annotation
- Refseq: XP_020574105.1 — auxin response factor 10-like
- TrEMBL: A0A2I0VNK2 — A0A2I0VNK2_9ASPA; Auxin response factor
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009725 — Biological Process — response to hormone
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g008088m, orange1.1g008078m
- Fragaria vesca: mrna02234.1-v1.0-hybrid
- Glycine max: Glyma.13G084700.1.p
- Gossypium arboreum: Cotton_A_10518_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D13G2411, Gh_D06G0360
- Juglans regia: WALNUT_00025004-RA, WALNUT_00007047-RA
- Medicago truncatula: Medtr5g061220.1
- Populus trichocarpa: Potri.002G089900.2, Potri.002G089900.1
- Salvia miltiorrhiza: SMil_00011888-RA_Salv
- Solanum melongena: Sme2.5_03336.1_g00003.1
Sequences
CDS Sequence:
- >PEQU_06068|Phalaenopsis_equestris|B3|PEQU_06068
ATGCCATCCAAAATAGACAAAGGCAAATCGCCGGCCGCCGCCGGCGAATCCCTCTCCATCAACCCCACCATATGGAAAGAACTCGCCGTCAATTCTCCCGCCCTCCCCCGCACCGGCTCCTCCGTCTACTACTTCTGCAACGGCCACGCCGAACAATGCCCCTCCTTTCCCCAAGACCTCTACACCGCCTTCACCTTCCCTTGCCATCTCGCCGCCGTCAATCTCCACGCCGATCCCACCACCGAGCAAGCCTTCGCCCCCCCCCCGCCCGCCGCCGCCGCCGCTGAACTTTCATCTCCGGCGATGGATGCAACACCCATCGCCGGAGGCGTGATTTCGGTCGCAATAACGCTGACGAAGAGCGAAACGAATTACAAGAGCAAGAGCTTCTTGAGTCTGCCAGAAAGTGCGGGGCGTGTGTTTCATCCGTTGGGGACGGGGGAGGAAGTGGACGTGTTTGATTTGAATAACCGACGGTGGAGATTTCAGCATTTTTACGGGGGGAATCCGGCTAAGCATATGTTGACGGAAGGGTGGAGTTATTTTGCGTTGAGCAAGATGCTGGTTGCCGGAGATGTGGTGGTGTTCATGCGGGATGAGGACGGAGTGATTTTGGTCGGCTGCCGGCGGTGCGGGGACGATGAAGGTGGTGAGGCTCCGGCGATTAAGGGATCGTCGAACAGGAGTTGTAGGTTTGATGCGGAGGCACGAAAAAAGAGAGAGGATTTAGAGATGGTACTTAGAGCATTGCGGTGGGCGGAGGAAGACGGCGAAGGGGTAGTGGAAGGCAAATATTATCCTGACACGAAGCTTCCGGTTTATGTGGTGGAGAAGGAGGTGGTGGATGAGGCGCTAAAGGTTAAGTGGGCGTCAGGAATGTGTGTAGGCAAGAGGTGGGAGAGGGCTAATGGCCTCATGTTTTGGCTCTATGGTACCATCAGCTCTCTCTCTCTGGAATCTGCTGATACACCATGGCGTATGCTTGAGGTTATTTGGGATGAAACAGATAAGAAGACTCGCGAGAATCCATGGGATGTTAAGCCTATCTTTTCGGTCATTACTCAAAAGCGGGACGAAAAGGTCCAAATTGAAGCTTCGGCTGACAATAAAGGTGAAGAAGCGCCGTCCACCGCCAGCGAGTCTCACGCCATCGACTTCATCATATGGAAAGAACTCGCCGCCCGATCCATCGAACTCCCTCGCGCCGGCTCCTGCGTCTACTACTTCTGCGACGGTCACGCCGAACAATGCTCTGCTTTTCCCCCAGGCCTCTACACCGCCTTCACCTTCCCCTGCTATCTCGCCGCCATCGACTTCGACGCCGATCCCACCACCGAGCAAGTCTACGCCACATTCACTCTCACCACCGCCGACTTCTCATCCACGCCCTTGGATACATCCATCTCCGGCGGCGGCCTCATTTCCGTTGCAACAACACTGACGAAGGGCGAAACTAACTACCAGAGAGAAAGCTTCTTAAGCCTCCCGGAAAGTGCCGGCCGGATATTCGGTGAGCCGGAGGCGGGGCAGGAGGTGGACGTGTTTGATTTGAATGACGGGCGGTGGAGGTTTCGCCATGTTTTCGAGGGAAATCCGCAGCGGCATTTGTTGACGGATGGGTGGAGTTATTTTGCGTCGAGCAAGATGCTTGTCGCCGGCGATGAGGTGGTATTTATAGGGGATGATGAAGGAATAATTATCGTCGGTTGCCGGCGTTGTGGCGACGATGGAGACGGTGGGGATGATGAAGACGGCTTGATTGAGGGATCGTACAGGACAAGAAGGAAGAGAGAGGAGACAGAGAGGGTGTTCAGAGCATTGCGGTGGGCGGAGGAAGACGGGGAAGGGGTGGTGGAAGCGAGATATTACCCTGACACCAAGCTTCCAGTTTATGTGGTGGAGAAGGAGGTGGTGGATGAGGCGTTGAAGGTTCAGTGGACGCCAGGAATGCGAGTATGCAAGAAGTGGGAGACGGCTAATGGCTTGATTTTTTGGCTATTTGGTACTCTCGACTCTCTCTCCCTGGATTCTGCTGATACTCCATGGCGTATGCTTGAGATTATTTGGGATGAAACAAACATGAAGACTCGCGAGAATCCATGGGAAGTTAACCCCATCCCCTTGGTCAGTATTTCAAAGCCGGATAAACTAATCCAGAATGATCCTGCGACGGTTAGTCAAGTAATTAGTACTTAG
Protein Sequence:
- >PEQU_06068|Phalaenopsis_equestris|B3|PEQU_06068
MPSKIDKGKSPAAAGESLSINPTIWKELAVNSPALPRTGSSVYYFCNGHAEQCPSFPQDLYTAFTFPCHLAAVNLHADPTTEQAFAPPPPAAAAAELSSPAMDATPIAGGVISVAITLTKSETNYKSKSFLSLPESAGRVFHPLGTGEEVDVFDLNNRRWRFQHFYGGNPAKHMLTEGWSYFALSKMLVAGDVVVFMRDEDGVILVGCRRCGDDEGGEAPAIKGSSNRSCRFDAEARKKREDLEMVLRALRWAEEDGEGVVEGKYYPDTKLPVYVVEKEVVDEALKVKWASGMCVGKRWERANGLMFWLYGTISSLSLESADTPWRMLEVIWDETDKKTRENPWDVKPIFSVITQKRDEKVQIEASADNKGEEAPSTASESHAIDFIIWKELAARSIELPRAGSCVYYFCDGHAEQCSAFPPGLYTAFTFPCYLAAIDFDADPTTEQVYATFTLTTADFSSTPLDTSISGGGLISVATTLTKGETNYQRESFLSLPESAGRIFGEPEAGQEVDVFDLNDGRWRFRHVFEGNPQRHLLTDGWSYFASSKMLVAGDEVVFIGDDEGIIIVGCRRCGDDGDGGDDEDGLIEGSYRTRRKREETERVFRALRWAEEDGEGVVEARYYPDTKLPVYVVEKEVVDEALKVQWTPGMRVCKKWETANGLIFWLFGTLDSLSLDSADTPWRMLEIIWDETNMKTRENPWEVNPIPLVSISKPDKLIQNDPATVSQVIST