Information report for PDK_30s705821g005
Gene Details
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Functional Annotation
- Refseq: XP_008786201.1 — putative B3 domain-containing protein Os03g0621600
- TrEMBL: A0A2H3XN02 — A0A2H3XN02_PHODC; putative B3 domain-containing protein Os03g0621600
- STRING: XP_008786201.1 — (Phoenix dactylifera)
- GO:0005773 — Cellular Component — vacuole
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Glycine max: Glyma.14G079100.1.p, Glyma.17G246000.1.p
- Gossypium arboreum: Cotton_A_33039_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D01G1010, Gh_A01G0961
- Populus trichocarpa: Potri.014G036900.1, Potri.002G129900.1
- Ziziphus jujuba: XP_015884753.1, XP_015884752.1, XP_015884751.1, XP_015884750.1, XP_015884749.1, XP_015884748.1, XP_015884746.1
Sequences
CDS Sequence:
- >PDK_30s705821g005|Phoenix_dactylifera|B3|PDK_30s705821g005
ATGGATCCGTGCCCAGAAATGGTCCAAGATAGAGATGGTGGTGCGCAAAAGCCTGAGTTCTTCAAAGTCTTGATGCATGGTTTTGAGGAGGAGCTGCGCATTCCACCTGCATTTATTAAGTACATTATCGATCTTAGAGGCAAAAGAGCTACACTAATTAGTCCCCTCGGCAAGTCATGGAGTGTCCGCATTCATGGCCACAACCGAAACATGTGCTTCAGAGAGGGTTGGCCAGAATTTGCCCGAGCCCATGACTTAAAGATGGGTTTCTTCATGGTGTTCAGCTATGAAGGTGGTGGGACTTTCAGCTTCCGGGTTTTTGATACGAATGCAAGCCTGAAAAACTATGGTCCCATTGGTGTGCAGACTGTCGGACATGAGGACATCAACCAAGATTTGAACTCCAAGAATGATTCAGAAGATATGATTCAAAGGCCAGAAATGCAAGTTAGCATAAGACAGATGAGAATGAAGGATGGAGGAGAAATGTCAACTGAAAGAAAGTGTAGCTATTGCAGTAGGAGGAAATCTTTTGAGGCCATCATAAAAGATCAGAACCTTAGTAAGAATTACATGAATATTCCTGCCTCATTCAGAGAATCCAATCACATAGCAACAAATCAAGAAGTGATTCTTGAGGATGTGGAAGGCAGGTCATGGCGTGTCAGAATATGCAACAGGGGCACAAAGGGTGTACACTTGGCACAAGGATGGCAAGAATTTTGTGCCGATACTGGATTGGAAGAAGGCGATAAGTGTATCTTTGAGCTTGCATCCATGAAGGACAACAAAATGCTCGTTAGGATATTCAAACGGCTAAATTGGAATGAGTTCCATAAGCTAGACCTTGTCCTTGGCCTTTCTTGCAAGAAATCAAAGCACCTCAGAGAACACTTTCAAAAGTATTCTGTATTATATCATCAAACTATTATTATCAAGCTTCACCTGCGACGGTCCTCTGGAATGGAACAGAGGTGCAGCCGCTGCATGAATTGGGAAGAGCATTGTTACTGGGATCATTTTGAGAAAACAAGGATCCATTTTCTCAAGGTTATGGATGGTGATTTCTCTCATCGCATGACTATCCCAAAGAAGTTTGTGAAGAATTTCAAAGAAGAATTGTCTCAAAATATTCAACTGAAAGGTCCTAGTGGCAATCTATGGCATGTCAGACTGTCAAATGATGCAGAAGATATGATTTTTGACGATGGATGGAAGCAGTTTGTTGAAGATCACTATATTAAAGAAGATGATCATTTGGTTTTCAAATACAATGGCAACTTATGCTTCAGTGTACTGATTTTTGATCAGAATGGTTGTGAGAAAGAAGCATGTTACTTTGTAAAGGATCCCAAGGATAAAGCTAATGAATCATGCCAATCAGGGAAAGAGATTATGGATGATTCCTTGGAAATTATCCATGAATTCTTACCTCCCAAAGCTCATAGTCCTTGCTCTTCAAAAATATTCTGTAATGACAGAAAACAAATGCGACGTCTATCGGCTCCTCGCAAGCTTCCTCAGGTCAATGATGATATCTCTGACAACATTCTGAGTGTCAAATCAACTAATCCCAAGAGAAAAATCAGAGATGACAACTTTTCCAGTGATTCAGTGAATGAAAATGAATTTGCCATCTGTCTTAAAAATGTTATGATAAGGAGTTCCAGTTGTCTTGTCTTGTTCTTGGTGACCCAAAATTCTATAAATTACTTGATGATCCAAAGTTTTATAAATTACTTGATCACAATGTCAAGATTACTTGCTAGCATGGTCTGCCATACCGCCTGGTATGGGGCGCATGGTACCGGCAGAAAATCGGTACAAAACATACCTTCAAGTCGATACAAGCTCCGTACCATCCGTACCGAGGTATACCAACCTGTACCAAGATGTACCGAGACCATTCCAAATTGCTTTGCAGCTGAGCATCTTCCTCGTGAAAATCAAAAAATTGCTCTTCGCCTCCCACACGGGAAGAAAATATGGAGTATGAGTTATTTACATTATGTTGGTTACTCGGGGCTTGGCAAACAATGGAAACAGTTTGCATTGGACAACAACTTGGAAGAAGGAGATGTCTGCGTTTTTGAGCTAACTGGAGAGCTGGTCATGGATGTTCACATCTTCCGGGCTGTCAATGACACCACCCTGCCCAGCAGGGTATCTAACTAA
Protein Sequence:
- >PDK_30s705821g005|Phoenix_dactylifera|B3|PDK_30s705821g005
MDPCPEMVQDRDGGAQKPEFFKVLMHGFEEELRIPPAFIKYIIDLRGKRATLISPLGKSWSVRIHGHNRNMCFREGWPEFARAHDLKMGFFMVFSYEGGGTFSFRVFDTNASLKNYGPIGVQTVGHEDINQDLNSKNDSEDMIQRPEMQVSIRQMRMKDGGEMSTERKCSYCSRRKSFEAIIKDQNLSKNYMNIPASFRESNHIATNQEVILEDVEGRSWRVRICNRGTKGVHLAQGWQEFCADTGLEEGDKCIFELASMKDNKMLVRIFKRLNWNEFHKLDLVLGLSCKKSKHLREHFQKYSVLYHQTIIIKLHLRRSSGMEQRCSRCMNWEEHCYWDHFEKTRIHFLKVMDGDFSHRMTIPKKFVKNFKEELSQNIQLKGPSGNLWHVRLSNDAEDMIFDDGWKQFVEDHYIKEDDHLVFKYNGNLCFSVLIFDQNGCEKEACYFVKDPKDKANESCQSGKEIMDDSLEIIHEFLPPKAHSPCSSKIFCNDRKQMRRLSAPRKLPQVNDDISDNILSVKSTNPKRKIRDDNFSSDSVNENEFAICLKNVMIRSSSCLVLFLVTQNSINYLMIQSFINYLITMSRLLASMVCHTAWYGAHGTGRKSVQNIPSSRYKLRTIRTEVYQPVPRCTETIPNCFAAEHLPRENQKIALRLPHGKKIWSMSYLHYVGYSGLGKQWKQFALDNNLEEGDVCVFELTGELVMDVHIFRAVNDTTLPSRVSN