Information report for Oropetium_20150105_16901A
Gene Details
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Functional Annotation
- GO:0009116 — Biological Process — nucleoside metabolic process
- GO:0000166 — Molecular Function — nucleotide binding
- GO:0003677 — Molecular Function — DNA binding
- GO:0003824 — Molecular Function — catalytic activity
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi3g18810.7.p, Bradi3g18810.6.p, Bradi3g18810.5.p, Bradi3g18810.4.p, Bradi3g18810.3.p, Bradi3g18810.2.p
- Oryza sativa: OsMTN, PIBP1
- Panicum virgatum: Pavir.4KG005800.1.p, Pavir.4NG008900.2.p, Pavir.4NG008900.1.p, Pavir.4NG008900.3.p
- Setaria italica: Seita.4G008200.1.p
- Setaria viridis: Sevir.4G008000.1.p
- Zea mays: GRMZM2G102938_P05, GRMZM2G102938_P04, GRMZM2G102938_P02
Sequences
CDS Sequence:
- >Oropetium_20150105_16901A|Oropetium_thomaeum|B3|Oropetium_20150105_16901A
ATGGCTAACGAATGCTCTGAGTTTCTCAAAGGTGCCCCATGGATTAGGTACCACGGCAACTACAAAGGCCTCCACATCGACCTTGTATGGCCGGGAAAAGATCCTGTTCTCGGAGTGGACAGTGTTGGTACAGTATCAGCAGCTCTTGTCACTTATGCATCCATACAAACGTTAAAGCCAGATCTTATCATTAATGCAGGCACTGCTGGTGGCTTCAAGGCAAAAGGGGCAAGTATTGGAGATGTCTTCTTAGCATCAGATGTTGCATTCCATGACAGGAGAATACCAATACCGGTTTTTGACATGTATGGAATTGGAGCGCGGAAAGCACTGGAGACACCTAATATGCTGAAGGAACTCAATTTGAAGGTTGGCAAGCTGTCAACAGGTGATTCTCTAGATATGTCTCCCTACGACGAGACAGCAATTCTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCAGCTGTGGCATACGTTGCTGACATGTTTTCCACACCTGCTATCTTCGTGAAAGCTGTGACTGATATTGTAGATGGGGAGAAGCCGACAGCCGAGGAGTTTCTGCAAAACCTGGTTGCTGTGACGGCGGCCCTGGACCAGGCAGTGACTGAAATTGAGCAGTCAGCAGAATACGTGAGTCACACTGGGCATTGCCAGTGTCCACTGTGCAGTGCCAGTACAGATGCCCGAGCTGACAAGAGCGCCTCTTCGTCTCCCCTGCCTCATCAGATGGAGACCCCTGCGTCTGGCCGTCAATCGAACCGCCGGCAGCTGCCGGATCCCTGCATCACATTTGGCATCGAGCTGCCGGATCCCCGCACCGCGTTCCAGCTCGAGGCCGCCGGCGTCGAGCCTGAGCTACCGAATGCCTGTACCAAGATCAAGCTGATCGAGGCCGCCGCCGTCGAACCAAAGCCGGAGCCTTGCGATTGCGAGGAGGACGACGCGCCACTGTCGCCTGGGGACGCAGCCGCGGCCGATGACTGGGAGATCAGCCCGCTGTCCGGCGACCACCCCTTCTTCACCACGGTCCTGTCCCGGACCCAATTGCAGAAGCACTTCCAGCTGGCCATTCCGCCGCGTTTCCAGCGGCACCTCCCTGCGGCGCGCGTGCCCGCCGTGCTCCGCTACGGCGGCAGGTCGTGGACGGCGAGCTACCGCGGCGATCTCAAGCTGAGGAAGCTCGACACGGCGGCGTGGAGGGACTTCGCCGTCGACAACCGCCTGCGGGTCGGGGACGCCTGCGTCTTCGAGCTCCTCGTCACGGGCGCGGGCGCCCGAACCGAAACCGAACCTGAATCTGAAGAAGCCAGGAACCGCCGTGACAGCGACATGAAGGAGGAGAAAGAGATGGTGTTCCGTGTGCAGGTGCTCCGCGGCGGACTGCCGCAGGAGGTCACCTCCAAGGGCGACACAGCCGACGAGCCCCTCGTCATCGATCATCAGTCAAGGAAGAGCTTTAGCTTTTGGTGTGCTATGAAATCTGAATGGATGAACCGGGTGTTTAATTTGCTGGTGAGGAGTGTCAAGGTCACTAATGTCTCCCTGACTGCAACTGTGCAAGACATTAAGGAGTTCTTTTCCTTTTCAGGTGACATTGAACATGTGGAGATGCAAAGTGGTGATGAGTGGTCTCAAGTTGCATATGTGACTTTCAAAGATGCGCAAGGAGCAGAGACTGCACTTCTTCTTTCGGGTGCCACTATAGTTGACCTTTCTGTCATCATCGAACCGGCTCCTGAATATCAGCCACCTCCTTCTGCCTCTGCCCCACCGACGACTGGAACCAGGGTCCCAGTTGGGGGTGACAATGTTGTCCACAAGGCTGAGGATGTTGTGAGCACTATGCTTGCTAAGGGTTTCGTCCTGGGCAAAGACGCCATTGGCAAGGCAAAATCATTTGATGAGAAGCATGGGTTTACATCAACAGCTGGTGCGAAGGTGGCCTCCATTGATAAGAAGATTGGCCTGAGTGAGAAGATTACCACGGGCACTTCCATGGTCAGCGAGAAGGTTAAAGAGATGGATCAGAAGTTCCAAGTGTCGGACAAGACCAAATCTGCATTCGCTGCTGCTGAACAGAAAGTAAGCAGTGCTGGGTCTGCTATCATGAAGAACAGGTACGTCTTCACAGGGGCGTCTTGGGTGACCAATGCATTCAACAAAGTTAGCAAGGCTGCGACGGATGTCGGGACAATGACAAAGGAGAAAATGGCAGCTGAGGAGCAGCAGAAGGCTTCCGTGATCGATATTGCAGCACTTGATATTCGTTATATCCGCACTGTCAAATCAGCTTAA
Protein Sequence:
- >Oropetium_20150105_16901A|Oropetium_thomaeum|B3|Oropetium_20150105_16901A
MANECSEFLKGAPWIRYHGNYKGLHIDLVWPGKDPVLGVDSVGTVSAALVTYASIQTLKPDLIINAGTAGGFKAKGASIGDVFLASDVAFHDRRIPIPVFDMYGIGARKALETPNMLKELNLKVGKLSTGDSLDMSPYDETAILNNDATVKDMEGAAVAYVADMFSTPAIFVKAVTDIVDGEKPTAEEFLQNLVAVTAALDQAVTEIEQSAEYVSHTGHCQCPLCSASTDARADKSASSSPLPHQMETPASGRQSNRRQLPDPCITFGIELPDPRTAFQLEAAGVEPELPNACTKIKLIEAAAVEPKPEPCDCEEDDAPLSPGDAAAADDWEISPLSGDHPFFTTVLSRTQLQKHFQLAIPPRFQRHLPAARVPAVLRYGGRSWTASYRGDLKLRKLDTAAWRDFAVDNRLRVGDACVFELLVTGAGARTETEPESEEARNRRDSDMKEEKEMVFRVQVLRGGLPQEVTSKGDTADEPLVIDHQSRKSFSFWCAMKSEWMNRVFNLLVRSVKVTNVSLTATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDAQGAETALLLSGATIVDLSVIIEPAPEYQPPPSASAPPTTGTRVPVGGDNVVHKAEDVVSTMLAKGFVLGKDAIGKAKSFDEKHGFTSTAGAKVASIDKKIGLSEKITTGTSMVSEKVKEMDQKFQVSDKTKSAFAAAEQKVSSAGSAIMKNRYVFTGASWVTNAFNKVSKAATDVGTMTKEKMAAEEQQKASVIDIAALDIRYIRTVKSA*