Information report for Oropetium_20150105_13163A
Gene Details
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Functional Annotation
- Refseq: XP_004971015.1 — regulatory protein viviparous-1
- Swissprot: P26307 — VIV1_MAIZE; Regulatory protein viviparous-1
- TrEMBL: A0A2T7DCM6 — A0A2T7DCM6_9POAL; Uncharacterized protein
- STRING: Si000497m — (Setaria italica)
- GO:0009657 — Biological Process — plastid organization
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0031930 — Biological Process — mitochondria-nucleus signaling pathway
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0001076 — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Oropetium_20150105_13163A|Oropetium_thomaeum|B3|Oropetium_20150105_13163A
ATGGACGCTTCCGCCGGCTCATCGCCACGGCACTCCCAAGAGAACCCGGCCAGGCACGGTGGCGGCCGGGGGAAGGAACTAGCGGAGGAGATCGGCGGCGGGGAGGCGGCGGATGAGTTCATTTTCGCCGACGACACGTTCCCTTCCCTCCCGGATTTCCCCTGCCTTTCGTCGCCGTCCAGCAGCTCAACCTACTCGTCCTCGTCCTCCTCCAACTCCTCCAGCACCTACACCAACGCCGGAGGAAGGTCTGGTGGCGGCGGCGGGGCTGATGGCGTCGCCAGGGAAGCCTCCGAGCCACCGGCCTCAGGCGGGGAGGGATTCGATGCGCTCGCGGACATGGACCAGATCCTTGACTTCTCATCTCTCTCCGTGCCCTGGGACTCGGAGCCGTTGTTCCCTGACTTGGGCATGATGATAGAGGGCGCCATGTCCGCGCCGCCGCACCCAGTGGGCGACGTCCCGACCGGCAGAGGCCAGGGTAAGGCCTTGCTGGAAGGGACAGGGGGAGAGGAGGAGGCTTGCATGGATGCTACGGCGGCGGGGGACGACCTGCCGCGGTTCTTCATGGAGTGGCTCACAAGCAACCGTGAGAGCATCTCGGCTGAGGATCTCCGCGGAATACGCCTCCGGCGGTCCACCATCGAGGCTGCTGCTGCCCGGCTCGGTGGCGGACGCCAGGGCACCATGCAGCTACTGAAGCTCATCCTAACATGGGTGCAGAACCACCACCTCCAGAAGAAGCGTCCTCACGGCGCGACGGAGGAGGGGGCGGCCTCGCACTCGCAGCATGGCCACGGTGGCCAGCTCTCGAGTCCTGGCGCCAACCCTGGCTACGAGTTCCCAACCGGTGGACAGGACATGGCCGGAACGTCCTGGGCGCCCTACCAGCAGTCGTCCTTCACGCCACCGGCTTACGGTGGCGAGAGTACGGTATGCCCGAGCGGCGGCGCAGGGCAACAGTACACGTTCCACCAGCAGAGCTGCGCCACGAGCAGCGTGGTCGTGAACAGCCAGCCGTTCTCCCCGCCGGCGGTGGGCGACATGCACGGGGGGAACGTCTCGTGGCCGCAACAGTACGTGCAGTTCCCTGGCGCTTCCACAACGGGCTCGTACCCTATGCCGCCGCGCGTCGTTCCGCCGCCCTTCACCGCCGGATTCGCCAGCGGACCGTACCCCACCATGGGTTCCCAGCGCATGGCCGGCGTCGAGCCTGCCTCGGCCACCAAGGAGGCCCGGAAGAAGCGCATGGCGCGGCAGCGGCGGCTGTCGTGTCTGCAGCAGCAGCGCAGCCAGCAGCTGAACCTAGGCCAGATCCAAGGCGCAACGGTCCTCCAGCAGCAGGAGCCCTCCCCACGCGCGGCGCACTCGACGCCCGTCACGCCCTCAGCTGGTGGCTGGTTCTGGCCGTCGAGCTGCCAGCAGATCCGTAACCCGCTCTCACAGTCCAATTCCTCGACGACGCCGGTGCTGCAGGTGTCCTCACCGGAGCCGGCGGCGGCGCCGTCGTCGTCCTCCGCACGTCAGGAGGAGAGTCCCCAGCGCGCTGCAGCATCAGCATCCGATAAGCGCCATCAGAGCGCCGGGAAGGCGGACAAGAACCTGCGGTTCCTGCTGCAGAAGGTGCTGAAGCAGAGCGACGTCGGGAGCCTCGGTCGCATCGTGCTCCCCAAAGAAGCGGAGATTCACCTGCCGGAGCTGAAGACGAGGGATGGCATCTCTATCCCGATGGAGGACATCGGCACATCGCGGGTTTGGAACATGCGGTTTTGGCCCAACAACAAGAGCAGGATGTATCTCCTAGAGAACACAGGTGATTTTGTCCGCTCCAATGAGCTTCAAGAGGGGGATTTCATCGTGATCTACTCTGATGTGAAGTCGGGAAAATATCTTATACGGGGGGTGAAGGTACGGCAGGCGCATGAGCAAGCCAGAGGTTCCGGTGTTCTAGGCAAGCACAAGCACGGGTGTCCAGATAGAGCCGGTGCTTCGGGCCTGCAGGAAGACGGCGGTGGAGTCGACGGCGCCTGCAAGGGTAAGTCGCCTCACGCCGCCGTGCGGCGGGCTCGTCAGGAGGCCGCCGCCATGGGCCAAATGGCCGTGAGCATCTGA
Protein Sequence:
- >Oropetium_20150105_13163A|Oropetium_thomaeum|B3|Oropetium_20150105_13163A
MDASAGSSPRHSQENPARHGGGRGKELAEEIGGGEAADEFIFADDTFPSLPDFPCLSSPSSSSTYSSSSSSNSSSTYTNAGGRSGGGGGADGVAREASEPPASGGEGFDALADMDQILDFSSLSVPWDSEPLFPDLGMMIEGAMSAPPHPVGDVPTGRGQGKALLEGTGGEEEACMDATAAGDDLPRFFMEWLTSNRESISAEDLRGIRLRRSTIEAAAARLGGGRQGTMQLLKLILTWVQNHHLQKKRPHGATEEGAASHSQHGHGGQLSSPGANPGYEFPTGGQDMAGTSWAPYQQSSFTPPAYGGESTVCPSGGAGQQYTFHQQSCATSSVVVNSQPFSPPAVGDMHGGNVSWPQQYVQFPGASTTGSYPMPPRVVPPPFTAGFASGPYPTMGSQRMAGVEPASATKEARKKRMARQRRLSCLQQQRSQQLNLGQIQGATVLQQQEPSPRAAHSTPVTPSAGGWFWPSSCQQIRNPLSQSNSSTTPVXXXXXXXXXXXPSSSSARQEESPQRAAASASDKRHQSAGKADKNLRFLLQKVLKQSDVGSLGRIVLPKEAEIHLPELKTRDGISIPMEDIGTSRVWNMRFWPNNKSRMYLLENTGDFVRSNELQEGDFIVIYSDVKSGKYLIRGVKVRQAHEQARGSGVLGKHKHGCPDRAGASGLQEDGGGVDGACKGKSPHAAVRRARQEAAAMGQMAVSI*